TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Not enough RAM for SRA get_accession #185

Closed lmurba closed 4 years ago

lmurba commented 4 years ago

Problem

When trying to run SRA files on the CloudOS pipeline, the pipeline fails due to not enough RAM

Solution

Update here

Implementation

memory = 10.GB --> memory = { check_max( 30.GB * task.attempt, 'memory' ) }