GTEx data are available through platforms, AnViL and Terra, but programmatically using the GA4GH FASP scripts. The Global Alliance for Genomic Health (GA4GH) is the world wide standards setting organization - the Federated Analysis Systems Project (FASP) working group developed wrappers to the data that are now available through the Gen3
gen3-drs-gtex-download
Solution
make a new docker container - store under the AnczukowLab container repository
Implementation
How will we implement the solution?
[ ] Step 1 - obtain a stable version of the appropriate files
[ ] Step 2 - build a lean Dockerfile that has the access to GTEx data as a stand alone function
[ ] Step 3 - modify the process gen3_drs_fasp process in the main.nf
Problem
GTEx data are available through platforms, AnViL and Terra, but programmatically using the GA4GH FASP scripts. The Global Alliance for Genomic Health (GA4GH) is the world wide standards setting organization - the Federated Analysis Systems Project (FASP) working group developed wrappers to the data that are now available through the Gen3 gen3-drs-gtex-download
Solution
make a new docker container - store under the AnczukowLab container repository
Implementation
How will we implement the solution?
process gen3_drs_faspprocess in the main.nf