Adds trimmomatic logs to multiqc report - Githubissues

TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

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Adds trimmomatic logs to multiqc report #244

Closed Vlad-Dembrovskyi closed 3 years ago

Vlad-Dembrovskyi commented 3 years ago

Description

This PR:

[x] makes trimmomatic logs to be saved to results/multiqc/trimmomatic/ folder (even when --cleanup option is enabled)
[x] adds trimmomatic logs info to multiqc report:

To test

Run a classic example command and check out multiqc folder in results and multiqc report

git  clone https://github.com/TheJacksonLaboratory/splicing-pipelines-nf
cd splicing-pipelines-nf
git checkout adds-trimmomatic-logs-to-report
nextflow run . -profile ultra_quick_test,docker
# Or if on sumner:
nextflow run . -profile ultra_quick_test,sumner

Vlad-Dembrovskyi commented 3 years ago

Also tested and approved by Brittany. Merging.