TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Documentation: reads.csv #255

Closed angarb closed 2 years ago

angarb commented 3 years ago

Problem

We are lacking documentation regarding the different read.csv files. Must add what this file should look like for local data, SRA, TCGA, and GTEX

angarb commented 2 years ago

GTEX: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/GTEX/reads.csv TCGA: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/TCGA/reads.txt SRA: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/testdata/sra/sra.csv Local: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/analyses/MYC_MCF10A_0h_vs_MYC_MCF10A_8h/reads.csv