Closed angarb closed 2 years ago
GTEX: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/GTEX/reads.csv TCGA: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/TCGA/reads.txt SRA: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/testdata/sra/sra.csv Local: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/dev-v2.1/examples/analyses/MYC_MCF10A_0h_vs_MYC_MCF10A_8h/reads.csv
Problem
We are lacking documentation regarding the different read.csv files. Must add what this file should look like for local data, SRA, TCGA, and GTEX