Consider limiting CI to 2 SRR ids in the input reads.csv - Githubissues

TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

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Consider limiting CI to 2 SRR ids in the input reads.csv #259

Open cgpu opened 3 years ago

cgpu commented 3 years ago

Concern

We currently have 4 samples in the CI, the minimum we need to examine parallelisation implementation with Nextflow is 2 samples.

Solution

Remove 2 of the 4 samples from the reads.csv input example.

Implementation

Remove 2 of 4 rows of this file: ./examples/testdata/single_end/tiny_reads.csv

which is used in the ultra quick test here: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/21b12f9b0f154b5a27b8704b597446015154eeb6/conf/examples/ultra_quick_test.config#L14