The download_reads continer (used for get_accessions process to retrieve sample from SRA) can't be pulled as singularity container in github actions ci test - always giving the same weird error.
Already tried rebuilding and repushing the container, changing the base image, pushing to quay.io instead of docker, running only one ci in parallel - always same error.
We decided to omit this ci test for now, as locally everything is fine and docker version of the same test is working.
Solution
What is a possible solution to the problem?
Possible solutions: try to rebuild the container in a different way, push to yet another repo, use official sra-tools container as base image.
Problem
The download_reads continer (used for get_accessions process to retrieve sample from SRA) can't be pulled as singularity container in github actions ci test - always giving the same weird error. Already tried rebuilding and repushing the container, changing the base image, pushing to quay.io instead of docker, running only one ci in parallel - always same error.
PR where the issue originally was found: https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/pull/253
PR used for debugging the issue (not successful): https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/pull/254
Internet knows not much about this error. So far found only this: https://bioinfo-guidelines.readthedocs.io/_/downloads/en/latest/pdf/
We decided to omit this ci test for now, as locally everything is fine and docker version of the same test is working.
Solution
What is a possible solution to the problem? Possible solutions: try to rebuild the container in a different way, push to yet another repo, use official sra-tools container as base image.