Fix saving files (#263) - Githubissues

TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

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Fix saving files (#263) #266

Closed Vlad-Dembrovskyi closed 2 years ago

Vlad-Dembrovskyi commented 2 years ago

Fixes _data/ files not being saved for multiqcs step
Fixes sample_lst.txt not being saved for prep_de step
Fixes no files being saved for stringtie_merge step
Fix prep_de step input
Saves tmp/*_read_outcomes_by_bam.txt in both rmats proc