TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
14 stars 9 forks source link

Parametrize output of STAR "Unmapped" file #274

Closed Vlad-Dembrovskyi closed 2 years ago

Vlad-Dembrovskyi commented 2 years ago

https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/265a24330427d4661ac8f2fdbfb1ba9e1257661f/main.nf#L632

use a separate PublishDir for "Unmapped" file, use an if condition for new parameter, by default off

This file is quite big and rarely useful, but sometimes users may need it.