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TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Save only compresses gtf files in stringtie_merge process #275

Closed Vlad-Dembrovskyi closed 2 years ago

Vlad-Dembrovskyi commented 3 years ago

https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/blob/21b12f9b0f154b5a27b8704b597446015154eeb6/main.nf#L713

Cause GTFs are big

Vlad-Dembrovskyi commented 2 years ago

Considered not worth it for now, cause need to compress and decompress multiple times in the pipeline