Dev v2.1 #287 - Githubissues

TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

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Dev v2.1 #287 #300

Closed Vlad-Dembrovskyi closed 2 years ago

Vlad-Dembrovskyi commented 2 years ago

Closes #287

Description

This PR adds the following alterations:

added a new --manifest parameter with the input being the .json manifest file downloaded from GTEX
--reads parameter receives a CSV file with samples for which the analysis will be limited to
filenames requested but not found in original manifest file are saved in a not_found_GTEX_samples.txt file