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TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Updates rmats version from 4.1.1->4.1.2 #316

Closed cgpu closed 1 year ago

cgpu commented 2 years ago

This PR resolves https://github.com/TheJacksonLaboratory/splicing-pipelines-nf/issues/312

To be able to test the pipeline, we would need the new docker image to be pushed to anczukowlab/splicing-rmats:4.1.2

To do so, @angarb can follow the steps below:

mkdir new-clean-folder
cd new-clean-folder
git clone https://github.com/TheJacksonLaboratory/splicing-pipelines-nf
cd splicing-pipelines-nf
git checkout updates-rmats-to-v4.1.2
cd containers/rmats4/
docker build -t anczukowlab/splicing-rmats:4.1.2 .
# username: anczukowlab password: <Brittany would know :) >
docker login

docker push anczukowlab/splicing-rmats:4.1.2