TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Update human_test to work outside Sumner #319

Open ilevantis opened 1 year ago

ilevantis commented 1 year ago

Can change links to input csv files to relative within repo. Can change links to read files within CSVs to direct SRA links.

Can potentially get STAR index from iGenomes (depending on version used in iGenomes - v2.7.9): https://ewels.github.io/AWS-iGenomes/