TheJacksonLaboratory / splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline
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Add process to downsample reads before strandedness inference #335

Closed imendes93 closed 1 year ago

imendes93 commented 1 year ago

This PR improves #320 by adding an intermediate process to downsample reads before salmon mapping.

A new parameter was added, --downsample, to control the proportion of reads to be retained. By default it's set to 0.1.