Modifying code of networkPlot function - Bibliometrix package

[ThisIsLorenzo]

We need to change the function's code to make the label's alpha = 1 while making the network lines' alpha = 0.3. Function's code is available prompting the function's name in the R console. > networkPlot Look for the line V(bsk.network)$label.color <- adjustcolor("black", min(c(1, alpha + 0.1))) change it with V(bsk.network)$label.color <- "black" Then, we add the alpha value in the code networkPlot(NetMatrix_keywords, normalize = "association", n = 20, Title = "Keyword co-occurrences", type = "fruchterman", size.cex = TRUE, size = 10, remove.multiple = F, edgesize = 3, labelsize = 3, label.cex = TRUE, edges.min = 1, label.n = 30, alpha = 0.3) However, I get an error when I try to run the revised > networkPlot function: Error in degree(bsk.network, mode = "all") : unused argument (mode = "all")

I did not change anything else in the function's code.

[itchyshin]

@ThisIsLorenzo

Change

V(bsk.network)$label.color <- adjustcolor("black", min(c(1,  alpha + 0.1)))

to

V(bsk.network)$label.color <- adjustcolor("black", max(c(1,  alpha + 0.1)))

You should name your function differently from the original code

[mlagisz]

@lorenzo which file contains this code?

[ThisIsLorenzo]

https://github.com/ThisIsLorenzo/PFAS_Systematic_Evidence_Map/blob/53d7033d50d05c2ca87e892a46d18948dacce648/R/analysis_code.Rmd#L4216 @mlagisz the only thing I changed in the function code is V(bsk.network)$label.color <- adjustcolor("black", min(c(1, alpha + 0.1))) with V(bsk.network)$label.color <- "black".

[ThisIsLorenzo]

V(bsk.network)$label.color <- adjustcolor("black", max(c(1, alpha + 0.1)))

Still having the same error: Error in degree(bsk.network, mode = "all") : unused argument (mode = "all") @itchyshin

[ThisIsLorenzo]

SFig.22.pdf This is how the Fig looks like at the moment. All of this is to bring down alpha for the network lines so that we can easier read the lables.

[itchyshin]

@mlagisz - please have a look at @ThisIsLorenzo's issue (too busy to have a look at it right now while teaching)

[mlagisz]

@itchyshin I am on it! almost there! @ThisIsLorenzo

[mlagisz]

Note: Cooking dinner while coding is a bad habit... as bad as coding while cooking dinner...