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TileDB-Inc
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TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
88
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16
forks
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Docker build does not work from within docker file
#536
arivers
closed
1 year ago
2
Update java/spark for 0.24.0 release
#535
awenocur
closed
1 year ago
1
Add direct IAF interface
#534
awenocur
closed
4 months ago
4
Add read_allele_frequency to python API
#533
gspowley
closed
1 year ago
1
set version for clang-format
#532
awenocur
closed
1 year ago
1
changes for IAF filtering/reporting
#531
awenocur
closed
1 year ago
1
Minor updates to python API
#530
gspowley
closed
1 year ago
1
Add quartodoc and other doc updates
#528
gspowley
closed
1 year ago
2
Move to main branch and fix broken links
#527
gspowley
closed
1 year ago
1
Change the metadata group to a directory
#526
gspowley
closed
1 year ago
6
Update in-repo docs
#525
gspowley
closed
1 year ago
1
Update dataset creation defaults
#524
gspowley
closed
1 year ago
1
Add in-repo quarto documentation
#523
Shelnutt2
closed
1 year ago
0
pin Pandas/avoid deprecated API
#522
awenocur
closed
1 year ago
1
Upgrade to 2.15.1
#521
awenocur
closed
1 year ago
1
Upgrade to Embedded 2.15.1
#520
awenocur
closed
1 year ago
1
[Backport release-0.23] fix: [sc-20370] Add null terminator to string INFO fields in combine VCFs
#519
github-actions[bot]
closed
1 year ago
0
[Backport release-0.23] Avoid realloc failure in htslib
#518
github-actions[bot]
closed
1 year ago
0
Avoid realloc failure in htslib
#517
gspowley
closed
1 year ago
1
[Backport release-0.23] Add REST ingestion support
#516
github-actions[bot]
closed
1 year ago
0
invalid next size on export -m gatk gvcfs
#515
Imoteph
closed
1 year ago
6
Update to TileDB 2.11.4
#514
gspowley
closed
1 year ago
1
Add REST ingestion support
#513
awenocur
closed
1 year ago
1
Python test can be reenabled
#512
awenocur
closed
1 year ago
1
Upgrade TileDB-VCF to 2.15
#511
awenocur
closed
1 year ago
1
Upgrade TileDB-VCF to 2.15
#510
awenocur
closed
1 year ago
1
Consolidate/vacuum stats array fix
#509
gspowley
closed
1 year ago
1
update API call
#508
awenocur
closed
2 months ago
2
Build tiledbvcf-py on Windows
#507
jdblischak
closed
1 year ago
15
change to use preprocessor '&&' operator
#506
dhoke4tdb
closed
1 year ago
0
python api missing for write to vcf?
#505
Imoteph
closed
1 year ago
2
Handle one missing allele in stats arrays
#504
gspowley
closed
1 year ago
1
[Backport release-0.22] fix race
#503
github-actions[bot]
closed
1 year ago
0
fix race
#502
awenocur
closed
1 year ago
1
Release 0.22.2
#501
awenocur
closed
1 year ago
1
Release 0.22.2
#500
awenocur
closed
1 year ago
1
[Backport release-0.22] Revert changes to fetch_vcf_headers_v4
#499
github-actions[bot]
closed
1 year ago
0
[Backport release-0.22] Release python GIL
#498
github-actions[bot]
closed
1 year ago
0
Document IAF functionality in Python
#497
awenocur
closed
4 months ago
2
Revert changes to fetch_vcf_headers_v4
#496
gspowley
closed
1 year ago
1
Release python GIL
#495
gspowley
closed
1 year ago
1
Release 0.22.1
#494
awenocur
closed
1 year ago
1
Release 0.22.1
#493
awenocur
closed
1 year ago
1
Release 0.21.2
#492
awenocur
closed
1 year ago
1
[Backport release-0.22] Memory usage and latency improvements
#491
github-actions[bot]
closed
1 year ago
0
[Backport release-0.21] Memory usage and latency improvements
#490
github-actions[bot]
closed
1 year ago
0
Memory usage and latency improvements
#489
gspowley
closed
1 year ago
1
[Backport release-0.22] limit headers to one for in-memory exports
#488
github-actions[bot]
closed
1 year ago
0
[Backport release-0.21] limit headers to one for in-memory exports
#487
github-actions[bot]
closed
1 year ago
0
[Backport release-0.22] Improve performance of loading VCF headers
#486
github-actions[bot]
closed
1 year ago
0
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