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TileDB-Inc
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TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
85
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14
forks
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Set the zstd compression level when creating the VCF dataset
#568
gspowley
closed
1 year ago
1
Clean up old markdown file
#567
awenocur
closed
1 year ago
1
[Backport release-0.25] Update Versions for Release 0.25.2
#566
github-actions[bot]
closed
1 year ago
0
Update Versions for Release 0.25.2
#565
awenocur
closed
1 year ago
1
[Backport release-0.25] fix IAF computation for all samples
#564
github-actions[bot]
closed
1 year ago
0
fix IAF computation for all samples
#563
awenocur
closed
1 year ago
1
Remove trailing README.md from link to obtain rendered page
#562
eddelbuettel
closed
1 year ago
2
[Backport release-0.25] Update Versions for Release 0.25.1
#561
github-actions[bot]
closed
1 year ago
0
Update Versions for Release 0.25.1
#560
awenocur
closed
1 year ago
1
[Backport release-0.25] Optimizations for IAF
#559
github-actions[bot]
closed
1 year ago
0
[Backport release-0.25] Enable ingestion QACheck when resume is enabled
#558
github-actions[bot]
closed
1 year ago
0
Release 0.24.3
#557
awenocur
closed
1 year ago
1
[Backport release-0.24] Optimizations for IAF
#556
github-actions[bot]
closed
1 year ago
0
[Backport release-0.24] Enable ingestion QACheck when resume is enabled
#555
github-actions[bot]
closed
1 year ago
0
Migrate to mamba-org/setup-micromamba@v1
#554
jdblischak
closed
1 year ago
1
Optimizations for IAF
#553
awenocur
closed
1 year ago
1
Enable ingestion QACheck when resume is enabled
#552
gspowley
closed
1 year ago
1
Upgrade TileDB-VCF to 2.16.0, update version for Java/Spark
#551
awenocur
closed
1 year ago
3
[Backport release-0.24] Upgrade TileDB-VCF to 2.15.4
#550
github-actions[bot]
closed
1 year ago
0
Update java/spark for version 0.24.2
#549
awenocur
closed
1 year ago
1
Upgrade TileDB-VCF to 2.15.4
#548
awenocur
closed
1 year ago
1
[Backport release-0.24] Validate GT value in stats ingestion
#547
github-actions[bot]
closed
1 year ago
0
Validate GT value in stats ingestion
#546
gspowley
closed
1 year ago
1
[Backport release-0.24] Update to C++ accelerated IAF computation
#545
github-actions[bot]
closed
1 year ago
0
[Backport release-0.24] Adamwenocur/sc 26281/fix flag
#544
github-actions[bot]
closed
1 year ago
0
Adamwenocur/sc 26281/fix flag
#543
awenocur
closed
1 year ago
1
Exporting VCF writes "binary" DB INFO field
#542
michaeljon
closed
10 months ago
5
Update Java/Spark for version 0.24.1
#541
gspowley
closed
1 year ago
1
[Backport release-0.24] Finalize stats arrays to optimize fragment layout
#540
github-actions[bot]
closed
1 year ago
0
Finalize stats arrays to optimize fragment layout
#539
gspowley
closed
1 year ago
1
Update to C++ accelerated IAF computation
#538
awenocur
closed
1 year ago
1
Update to c++17 in setup.py
#537
gspowley
closed
11 months ago
2
Docker build does not work from within docker file
#536
arivers
closed
1 year ago
2
Update java/spark for 0.24.0 release
#535
awenocur
closed
1 year ago
1
Add direct IAF interface
#534
awenocur
closed
2 months ago
4
Add read_allele_frequency to python API
#533
gspowley
closed
1 year ago
1
set version for clang-format
#532
awenocur
closed
1 year ago
1
changes for IAF filtering/reporting
#531
awenocur
closed
1 year ago
1
Minor updates to python API
#530
gspowley
closed
1 year ago
1
Add quartodoc and other doc updates
#528
gspowley
closed
1 year ago
2
Move to main branch and fix broken links
#527
gspowley
closed
1 year ago
1
Change the metadata group to a directory
#526
gspowley
closed
10 months ago
6
Update in-repo docs
#525
gspowley
closed
1 year ago
1
Update dataset creation defaults
#524
gspowley
closed
1 year ago
1
Add in-repo quarto documentation
#523
Shelnutt2
closed
1 year ago
0
pin Pandas/avoid deprecated API
#522
awenocur
closed
1 year ago
1
Upgrade to 2.15.1
#521
awenocur
closed
1 year ago
1
Upgrade to Embedded 2.15.1
#520
awenocur
closed
1 year ago
1
[Backport release-0.23] fix: [sc-20370] Add null terminator to string INFO fields in combine VCFs
#519
github-actions[bot]
closed
1 year ago
0
[Backport release-0.23] Avoid realloc failure in htslib
#518
github-actions[bot]
closed
1 year ago
0
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