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TileDB-Inc
/
TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
83
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13
forks
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Allow calls with missing genotypes to pass the IAF filter
#602
gspowley
closed
9 months ago
2
Upgrade to Embedded 2.17.3
#601
awenocur
closed
9 months ago
2
[Backport release-0.26] Allow REF calls to pass the IAF filter
#600
github-actions[bot]
closed
9 months ago
0
Allow REF calls to pass the IAF filter
#599
gspowley
closed
9 months ago
1
The nightly build job failed on Friday (2023-10-20)
#598
github-actions[bot]
closed
9 months ago
4
Variant Stats Direct Interface with IAF column
#597
awenocur
closed
8 months ago
1
Bump urllib3 from 1.26.17 to 1.26.18 in /apis/aws-batch
#596
dependabot[bot]
closed
9 months ago
1
[Backport release-0.26] Sort reads during sample delete
#595
github-actions[bot]
closed
9 months ago
0
Use micromamba in Azure CI
#594
gspowley
closed
9 months ago
2
Sort reads during sample delete
#593
gspowley
closed
9 months ago
3
Bump urllib3 from 1.26.5 to 1.26.17 in /apis/aws-batch
#592
dependabot[bot]
closed
9 months ago
0
Update to c++17
#591
jdblischak
closed
9 months ago
0
Java/Spark 0.26.1
#590
awenocur
closed
9 months ago
1
[Backport release-0.26] Add retry on VFS read error
#589
github-actions[bot]
closed
10 months ago
0
Add retry on VFS read error
#588
gspowley
closed
10 months ago
1
Backport Pin setuptools_scm<8.0.0 to build arrow from source in Dockerfile (#581)
#587
awenocur
closed
10 months ago
0
[Backport release-0.26] Update to Embedded 2.17.1
#586
github-actions[bot]
closed
10 months ago
0
Update to Embedded 2.17.1
#585
awenocur
closed
10 months ago
0
[Backport release-0.26] Iterate over polyploid calls
#584
github-actions[bot]
closed
9 months ago
0
The nightly build job failed on Tuesday (2023-09-26)
#583
github-actions[bot]
closed
9 months ago
9
Iterate over polyploid calls
#582
awenocur
closed
10 months ago
1
Pin setuptools_scm<8.0.0 to build arrow from source in Dockerfile
#581
jdblischak
closed
10 months ago
0
Enable LIBTILEDBVCF_PATH to be set as an environment variable
#580
jdblischak
closed
9 months ago
0
Nightly build for macOS
#579
jdblischak
closed
9 months ago
12
Update branch for a few URLs
#578
jdblischak
closed
10 months ago
0
Add nightly build (linux only for now)
#577
jdblischak
closed
10 months ago
4
TileDB 2.17.0 and Java/Spark 0.26.0
#576
gspowley
closed
10 months ago
1
Remove WERROR=OFF override for libtiledb build
#575
ihnorton
closed
10 months ago
0
Handle htslib errors reading VCF data
#574
gspowley
closed
10 months ago
1
Add TILEDB_WERROR cmake option
#573
ihnorton
closed
10 months ago
0
Test update to TileDB 2.17
#572
gspowley
closed
10 months ago
0
test CI
#571
awenocur
closed
9 months ago
1
Update java/spark for version 0.25.3
#570
gspowley
closed
10 months ago
1
[Backport release-0.25] Set the zstd compression level when creating the VCF dataset
#569
github-actions[bot]
closed
10 months ago
0
Set the zstd compression level when creating the VCF dataset
#568
gspowley
closed
10 months ago
1
Clean up old markdown file
#567
awenocur
closed
10 months ago
1
[Backport release-0.25] Update Versions for Release 0.25.2
#566
github-actions[bot]
closed
11 months ago
0
Update Versions for Release 0.25.2
#565
awenocur
closed
11 months ago
1
[Backport release-0.25] fix IAF computation for all samples
#564
github-actions[bot]
closed
11 months ago
0
fix IAF computation for all samples
#563
awenocur
closed
11 months ago
1
Remove trailing README.md from link to obtain rendered page
#562
eddelbuettel
closed
11 months ago
2
[Backport release-0.25] Update Versions for Release 0.25.1
#561
github-actions[bot]
closed
11 months ago
0
Update Versions for Release 0.25.1
#560
awenocur
closed
11 months ago
1
[Backport release-0.25] Optimizations for IAF
#559
github-actions[bot]
closed
11 months ago
0
[Backport release-0.25] Enable ingestion QACheck when resume is enabled
#558
github-actions[bot]
closed
11 months ago
0
Release 0.24.3
#557
awenocur
closed
11 months ago
1
[Backport release-0.24] Optimizations for IAF
#556
github-actions[bot]
closed
11 months ago
0
[Backport release-0.24] Enable ingestion QACheck when resume is enabled
#555
github-actions[bot]
closed
11 months ago
0
Migrate to mamba-org/setup-micromamba@v1
#554
jdblischak
closed
11 months ago
1
Optimizations for IAF
#553
awenocur
closed
11 months ago
1
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