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TileDB-Inc / tiledbsoma-feedstock

A conda-smithy repository for tiledbsoma.
BSD 3-Clause "New" or "Revised" License
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About tiledbsoma-feedstock

Feedstock license: BSD-3-Clause

About tiledbsoma

Home: http://tiledb.com

Package license: MIT

Summary: TileDB-SOMA API

Development: https://github.com/single-cell-data/TileDB-SOMA

Documentation: https://docs.tiledb.com/

Efficient storage and retrieval of single-cell data using TileDB

About libtiledbsoma

Home: http://tiledb.com

Package license: MIT

Summary: TileDB-SOMA C++ library

Development: https://github.com/single-cell-data/TileDB-SOMA

Documentation: https://docs.tiledb.com/

SOMA - for "Stack Of Matrices, Annotated" - is a flexible, extensible, and open-source API enabling access to data in a variety of formats. The driving use case of SOMA is for single-cell data in the form of annotated matrices where observations are frequently cells and features are genes, proteins, or genomic regions.

About r-tiledbsoma

Home: http://tiledb.com

Package license: MIT

Summary: TileDB-SOMA R API

Development: https://github.com/single-cell-data/TileDB-SOMA/tree/main/apis/r

Documentation: https://docs.tiledb.com/

R API for efficient storage and retrieval of single-cell data using TileDB

About tiledbsoma-py

Home: http://tiledb.com

Package license: MIT

Summary: TileDB-SOMA Python API

Development: https://github.com/single-cell-data/TileDB-SOMA/tree/main/apis/python

Documentation: https://docs.tiledb.com/

Python API for efficient storage and retrieval of single-cell data using TileDB

Current build status

Azure
VariantStatus
linux_64 variant
osx_64 variant
osx_arm64 variant

Current release info

Name Downloads Version Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms

Installing tiledbsoma

Installing tiledbsoma from the tiledb channel can be achieved by adding tiledb to your channels with:

conda config --add channels tiledb
conda config --set channel_priority strict

Once the tiledb channel has been enabled, libtiledbsoma, r-tiledbsoma, tiledbsoma-py can be installed with conda:

conda install libtiledbsoma r-tiledbsoma tiledbsoma-py

or with mamba:

mamba install libtiledbsoma r-tiledbsoma tiledbsoma-py

It is possible to list all of the versions of libtiledbsoma available on your platform with conda:

conda search libtiledbsoma --channel tiledb

or with mamba:

mamba search libtiledbsoma --channel tiledb

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search libtiledbsoma --channel tiledb

# List packages depending on `libtiledbsoma`:
mamba repoquery whoneeds libtiledbsoma --channel tiledb

# List dependencies of `libtiledbsoma`:
mamba repoquery depends libtiledbsoma --channel tiledb

Updating tiledbsoma-feedstock

If you would like to improve the tiledbsoma recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the tiledb channel, whereupon the built conda packages will be available for everybody to install and use from the tiledb channel. Note that all branches in the TileDB-Inc/tiledbsoma-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

Feedstock Maintainers