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TrEE-TIMC
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circhic
A python library to display HiC data on a circular strip and to integrate genomic data
https://tree-timc.github.io/circhic/
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When outer_gdis is 0, plot_hic plots nothing
#39
NelleV
closed
4 years ago
1
plot_hic's inner radius is wrong.
#38
NelleV
closed
4 years ago
5
ENH provide mapping between (x, y) and (theta, r)
#37
NelleV
closed
4 years ago
0
Building a mapping between HiC indexes and (theta,r)
#36
ijunier
closed
4 years ago
0
Define border thickness using matplolib framework
#35
ijunier
opened
4 years ago
0
FIX now clone the gh-pages branch
#34
NelleV
closed
4 years ago
0
ENH/DOC use jupyterlab instead of notebooks
#33
NelleV
closed
4 years ago
0
DOC/ENH larger front page image
#32
NelleV
closed
4 years ago
0
ENH/doc attempt to activate binder
#31
NelleV
closed
4 years ago
0
Add some form of user documentation
#30
NelleV
closed
4 years ago
0
ENH adding side raxis
#29
NelleV
closed
4 years ago
1
FIX interpolation should be 'none' for images
#28
NelleV
closed
4 years ago
0
distances must be en bp
#27
ijunier
opened
4 years ago
1
savefig in png format is bugging (mac OSX)
#26
ijunier
closed
4 years ago
3
Add interpolation='None' in ax.imshow of both circular_data and border_im
#25
ijunier
closed
4 years ago
1
Tick labels and label of of genomic distances do not show up on jupyter (3.7)
#24
ijunier
closed
4 years ago
2
Automatic location of figure legend
#23
ijunier
opened
4 years ago
1
fontsize is bugging in circhicfig.set_colorbar (jupyter 3.7)
#22
ijunier
opened
4 years ago
1
Border display depends on fig size
#21
ijunier
opened
4 years ago
1
ENH adding mode 'distant'
#20
NelleV
closed
4 years ago
0
FIX/DOC the origin is set to North
#19
NelleV
closed
4 years ago
0
ENH Add two modes for inner_gdis
#18
NelleV
closed
4 years ago
0
DOC the origin is set to the North of the plot and not the east!!!
#17
NelleV
closed
4 years ago
0
Adding B. subtilis & E. coli datasets.
#16
NelleV
closed
4 years ago
0
FIX only deploy doc for one of the branches
#15
NelleV
closed
4 years ago
0
MAINT Adding more travis environments
#14
NelleV
closed
4 years ago
0
FIX installation -- adding data folder
#13
NelleV
closed
4 years ago
0
Adding utility function + interfacing new options
#12
NelleV
closed
4 years ago
0
FIX warnings in generate_circular_map
#11
NelleV
closed
4 years ago
0
DOC Adding TOC for gallery
#10
NelleV
closed
4 years ago
0
DOC make the link between examples and code on the level of methods and not whole object
#9
NelleV
opened
4 years ago
0
Adding borders to heatmap
#8
NelleV
closed
4 years ago
0
DOC split gallery between technical and biological examples
#7
NelleV
closed
4 years ago
0
ENH switched resolution to function by function
#6
NelleV
closed
4 years ago
0
ENH Support linear chromosome.
#5
NelleV
closed
4 years ago
0
BUG Genomic ticks are still wrong
#4
NelleV
closed
4 years ago
0
ENH Allow some form of plots for genomic marks.
#3
NelleV
opened
4 years ago
0
MAINT Explore warnings during the creation of the circular strip from data.
#2
NelleV
closed
4 years ago
0
ENH add possibility of adding all the different plots to specific axes provided to each plot
#1
NelleV
opened
4 years ago
0
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