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TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
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Babel -> kboom #14

Open cbizon opened 4 years ago

cbizon commented 4 years ago

Babel was meant to be a prototype solution for identifier equivalence. It solves some problems, and is based on pre-existing code. In the long run, we would like to move to a more principled form of identifier equivalence mapping.

Babel should transform to a set of scripts that just pulls data from sources, and writes that data in a format that it will become the fodder for more advanced algorithms, such as kboom.

Targeting for Translator 1B.

cbizon commented 2 years ago

Part of this is complete: the data gathering and pairwise relationship parsing are now decoupled from the glomming / clique building. So exploring new ways of merging cliques should be much easier now.