Add properties to cliques, starting with the taxon of a gene or protein

TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.

MIT License

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Add properties to cliques, starting with the taxon of a gene or protein #155

Open gaurav opened 1 year ago

gaurav commented 1 year ago

We're currently developing the Attribute Server to store such information, but if we could integrate this into Babel, that would allow us to provide this information alongside the node normalization requests, which would speed things up.

cbizon commented 1 year ago

This will be very helpful in robokop/yobokop as well

gaurav commented 11 months ago

There are two straightforward ways to implement this:

As a Redis string that is a JSON object.
- Advantages: no need to use a more complicated Redis syntax.
- Disadvantages: no easy way to query for properties associated with an identifier.
As a Redis hash, where hash-keys can be properties.
- Advantages: easier to search for e.g. all identifiers having a particular property or a particular value for a particular property.
- Disadvantages: more complicated to implement.