TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
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Incorporate UMLS_UniProtKB mappings #361

Open gaurav opened 1 month ago

gaurav commented 1 month ago

This PR incorporates the UMLS_UniProtKB mappings from https://github.com/cbizon/UMLS_UniProtKB into the gene and protein concords so they can be incorporated into Babel. We only use UMLS/NCBIGene and UMLS/UniProtKB mappings -- we do NOT currently include NCBIGene/UniProtKB mappings for use in the GeneProtein conflation, because we get those from UniProtKB and should include these mappings anyway.

Note also that we could expect the number of duplicate IDs to go up if we are ingesting some of these UMLS identifiers in the chemical build as well.

WIP: needs to be tested.