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UCB-BioE-Genetic-Design-Automation
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ConstructionFileSimulator
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Import FASTA in parseExperimentalDirectory
#95
jcaucb
opened
1 year ago
0
Error on SimulateAssembly on sticky ends
#94
jcaucb
opened
1 year ago
0
SerializeConstructionFile is old serialization
#93
jcaucb
opened
2 years ago
0
Interface of spreadsheet-based design and CFS
#92
jcaucb
opened
2 years ago
0
Compilation error in GoldenGateSimulatorTest
#91
sanjyotbakshi
opened
2 years ago
0
Merging feature_return_construction_file branch with the master branch
#90
sanjyotbakshi
closed
2 years ago
0
Polynuc_5p Logic and tests
#89
michael51097
closed
2 years ago
1
Messaging missing with unmatched filename example
#88
jcaucb
opened
2 years ago
1
Usability: Provide mechanistic detection of PCR design error
#87
jcaucb
opened
2 years ago
0
Circular/Linear detection in .ape files
#86
jcaucb
opened
2 years ago
0
AssemblySimulator
#85
jcaucb
opened
2 years ago
0
Add more error reporting
#84
jcaucb
opened
2 years ago
0
Change Experiment parser to be less restrictive
#83
jcaucb
opened
2 years ago
0
Validation of product sequence: confirm no repeats
#82
jcaucb
opened
2 years ago
1
Transformation parser error for strains with existing plasmids
#81
jcaucb
opened
2 years ago
0
Make Polynucleotide.equals a proper Function
#80
jcaucb
opened
2 years ago
1
Syncronize CFS and tutorial syntax
#79
jcaucb
opened
2 years ago
0
Transformation verifies circularization
#78
jcaucb
opened
2 years ago
0
Sticky ends should not contain degenerate bases
#77
jcaucb
opened
2 years ago
0
Including dam and dcm methylation
#76
jcaucb
opened
2 years ago
0
Detection of primer dimers
#75
jcaucb
opened
2 years ago
1
Add getInputs to Step
#74
jcaucb
closed
2 years ago
1
Repeat sequence detection
#73
jcaucb
closed
2 years ago
4
Enable all type IIs enzymes in golden gate
#72
jcaucb
closed
2 years ago
1
Create cas12a crRNA example as a test
#71
jcaucb
opened
2 years ago
1
GenBankParser / ApeFileParser
#70
jcaucb
opened
2 years ago
0
Add incubateTemp to Transformation.java
#69
jcaucb
opened
2 years ago
0
Support all the NEB restriction enzymes
#68
jcaucb
closed
2 years ago
4
Transfer of annotations
#67
jcaucb
opened
3 years ago
1
Check 5' tails
#66
jcaucb
closed
2 years ago
1
Parser is excluding .gb file format
#65
jcaucb
closed
2 years ago
1
Validation of origins and markers
#64
jcaucb
opened
3 years ago
0
Change signature of SimulateConstructionFile to return a ConstructionFile
#63
jcaucb
closed
2 years ago
1
Better usability with syntax issues on sequences
#62
jcaucb
opened
3 years ago
0
Error messaging needed to help with syntax
#61
jcaucb
opened
3 years ago
0
Size warnings on Gibson
#60
jcaucb
closed
2 years ago
1
Change RevComp to use switch
#59
jcaucb
opened
3 years ago
1
Error making maps with NNK
#58
jcaucb
closed
2 years ago
3
Baked in default_features
#57
jcaucb
closed
3 years ago
1
In transformation validate antibiotic
#56
jcaucb
opened
3 years ago
0
In window report of status/result
#55
jcaucb
opened
3 years ago
0
Error messages during installation
#54
jcaucb
opened
3 years ago
0
Digestion should respect NEB end cutting chart
#53
jcaucb
closed
2 years ago
1
Simulation of Experiment ordering of execution
#52
jcaucb
closed
2 years ago
5
Usability and ease of install
#51
jcaucb
opened
3 years ago
10
Error parsing templates with spaces
#50
jcaucb
opened
3 years ago
0
Do scan for sequences in repo
#49
jcaucb
opened
3 years ago
0
Example of autograder for openwetware tutorials 1, 2, and 3
#48
jcaucb
opened
3 years ago
0
Testing on short oligo sequences
#47
jcaucb
opened
3 years ago
0
Add support for a 'mix' operation
#46
jcaucb
opened
3 years ago
0
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