UCSF-CoH Latina Breast Cancer Study

Shiny app to browser GISTIC peaks

Assuming you have followed the below 'Setup' instructions, then launch R in the same directory where the data files are and run:

> UCSF.CoH.LatinaBR::run_app()

This will open the below Shiny app in your web browser:

Setup instructions

Data files

Place the following files in the current working directory:

$ ls -l -- *.csv *.txt
-rw-rw-r-- 1 hb hb   19312 Dec  1 13:21 gistic_peaks_s5m7q05v2.csv
-rw-rw-r-- 1 hb hb 7779894 Dec  1 13:21 GTF_withEntrezID.csv
-rw-rw-r-- 1 hb hb 8203335 Dec  1 13:57 s5m7q05borad.all_thresholded.by_genes.txt

Install this R package

To install this package and all of its dependencies, do:

if (!require("remotes")) install.packages("remotes")
remotes::install_github("UCSF-Ziv-Lab/UCSF.CoH.LatinaBR")