issues
search
UPHL-BioNGS
/
Cecret
Reference-based consensus creation
MIT License
49
stars
26
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
mpx primer additions
#121
tives82
closed
1 year ago
4
Parallelize `samtools_sort`
#120
fanninpm
closed
1 year ago
1
Don't save sam files
#119
erinyoung
closed
1 year ago
3
Allow masking of repeat regions
#118
erinyoung
closed
8 months ago
0
Check compatibility with newest nextclade release
#117
erinyoung
closed
2 years ago
0
allow nf-core like samplesheet
#116
erinyoung
closed
1 year ago
1
mpx:vadr (QC metrics) error
#115
DrB-S
closed
2 years ago
19
WARN: Unable to fetch attribute for file...
#114
DrB-S
closed
2 years ago
9
iqtree2 failure: nextalign.aligned.fasta.renamed has wrong outgroup header for iqtree2
#113
DrB-S
closed
2 years ago
38
adding in markdup
#112
erinyoung
closed
2 years ago
0
Adding MPX
#111
erinyoung
closed
2 years ago
0
iqtree2 failure for monkeypox - wrong outgroup header in nextalign.aligned.fasta
#110
DrB-S
closed
2 years ago
4
All N's in MPX consensus
#109
DrB-S
closed
2 years ago
3
nextclade error
#108
tang27abu
closed
2 years ago
5
skip ampliconstats if not using primers
#107
erinyoung
closed
2 years ago
1
adding MPX specific tools
#106
erinyoung
closed
1 year ago
2
setup github action
#105
erinyoung
closed
1 year ago
0
update freyja
#104
erinyoung
closed
2 years ago
1
Add tools specific for MonkeyPox
#103
DrB-S
closed
1 year ago
9
NextClade Update
#102
erinyoung
closed
2 years ago
0
[heads up] Nextclade v2.0
#101
fanninpm
closed
2 years ago
2
Update to V3 (DSL2)
#100
erinyoung
closed
2 years ago
0
creation of a parameter schema
#99
k-florek
closed
2 years ago
2
Parsing of Freyja results into cecret results output
#98
poojasgupta
closed
2 years ago
2
Add collection dates for Freyja
#97
erinyoung
closed
1 year ago
0
Erin dev
#96
erinyoung
closed
2 years ago
0
Edits
#95
erinyoung
closed
2 years ago
0
pipeline crash after updating to latest pangolin version v4
#94
kittychaseNC
closed
2 years ago
9
Add freyja
#93
erinyoung
closed
2 years ago
1
Update Nextclade
#92
erinyoung
closed
2 years ago
1
update for readme
#91
erinyoung
closed
2 years ago
0
Erin dev
#90
erinyoung
closed
2 years ago
4
Pangolin lineage missing from summary file
#89
erinyoung
closed
2 years ago
0
Apple M1 & Docker Issue
#88
vestalgd
closed
2 years ago
3
Erin dev
#87
erinyoung
closed
2 years ago
0
Erin dev
#86
erinyoung
closed
2 years ago
0
Erin dev
#85
erinyoung
closed
2 years ago
0
Erin dev
#84
erinyoung
closed
2 years ago
0
Error executing process > 'pangolin (SARS-CoV-2 lineage Determination)'
#83
SVN-PhD
closed
2 years ago
7
fixed version
#82
erinyoung
closed
2 years ago
0
Set up tests for multifasta support
#81
erinyoung
closed
2 years ago
0
fixed bug with msa with multifastas
#80
erinyoung
closed
2 years ago
0
Erin dev
#79
erinyoung
closed
2 years ago
0
Update README.md
#78
erinyoung
closed
2 years ago
0
Erin dev
#77
erinyoung
closed
2 years ago
0
Erin dev
#76
erinyoung
closed
2 years ago
1
what if I want the input as assembled fastas?
#75
Shaokang123
closed
2 years ago
9
updated csv
#74
erinyoung
closed
2 years ago
0
Erin dev
#73
erinyoung
closed
2 years ago
0
fastp version is not captured correctly
#72
erinyoung
closed
2 years ago
0
Previous
Next