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UPHL-BioNGS
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Cecret
Reference-based consensus creation
MIT License
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fastqc results don't always line up in summary file
#148
erinyoung
closed
1 year ago
4
ONT
#147
erinyoung
closed
9 months ago
2
Add artic 5.3.2 primers
#146
erinyoung
closed
1 year ago
1
Version check
#145
github-actions[bot]
closed
1 year ago
0
Version check
#144
github-actions[bot]
closed
1 year ago
0
Cecret update
#143
erinyoung
closed
1 year ago
3
Version check
#142
github-actions[bot]
closed
1 year ago
0
Updating containers
#141
erinyoung
closed
1 year ago
1
Version check
#140
github-actions[bot]
closed
1 year ago
0
Version check
#139
github-actions[bot]
closed
1 year ago
0
Version check
#138
github-actions[bot]
closed
1 year ago
0
Version check
#137
github-actions[bot]
closed
1 year ago
0
Version check
#136
github-actions[bot]
closed
1 year ago
0
Version check
#135
github-actions[bot]
closed
1 year ago
1
Version check
#134
github-actions[bot]
closed
1 year ago
0
Datasets error
#133
erinyoung
closed
1 year ago
0
No input files were found
#132
tang27abu
closed
1 year ago
4
Version check
#131
github-actions[bot]
closed
1 year ago
0
Version check
#130
github-actions[bot]
closed
1 year ago
0
Added sample_sheet and a few container updates
#129
erinyoung
closed
1 year ago
0
Version check
#128
github-actions[bot]
closed
1 year ago
1
Version check
#127
github-actions[bot]
closed
1 year ago
0
Detect recombinants
#126
erinyoung
opened
1 year ago
0
Adding MPX PrimalSeq bedfiles
#125
tives82
closed
1 year ago
2
How to output iqtree results into specific directory?
#124
ybdong919
closed
1 year ago
2
remove err files and add versions
#123
erinyoung
closed
1 year ago
2
errors when running cecret wf
#122
tang27abu
closed
1 year ago
2
mpx primer additions
#121
tives82
closed
1 year ago
4
Parallelize `samtools_sort`
#120
fanninpm
closed
1 year ago
1
Don't save sam files
#119
erinyoung
closed
1 year ago
3
Allow masking of repeat regions
#118
erinyoung
closed
5 months ago
0
Check compatibility with newest nextclade release
#117
erinyoung
closed
1 year ago
0
allow nf-core like samplesheet
#116
erinyoung
closed
1 year ago
1
mpx:vadr (QC metrics) error
#115
DrB-S
closed
1 year ago
19
WARN: Unable to fetch attribute for file...
#114
DrB-S
closed
1 year ago
9
iqtree2 failure: nextalign.aligned.fasta.renamed has wrong outgroup header for iqtree2
#113
DrB-S
closed
1 year ago
38
adding in markdup
#112
erinyoung
closed
1 year ago
0
Adding MPX
#111
erinyoung
closed
1 year ago
0
iqtree2 failure for monkeypox - wrong outgroup header in nextalign.aligned.fasta
#110
DrB-S
closed
1 year ago
4
All N's in MPX consensus
#109
DrB-S
closed
1 year ago
3
nextclade error
#108
tang27abu
closed
1 year ago
5
skip ampliconstats if not using primers
#107
erinyoung
closed
1 year ago
1
adding MPX specific tools
#106
erinyoung
closed
1 year ago
2
setup github action
#105
erinyoung
closed
1 year ago
0
update freyja
#104
erinyoung
closed
1 year ago
1
Add tools specific for MonkeyPox
#103
DrB-S
closed
1 year ago
9
NextClade Update
#102
erinyoung
closed
2 years ago
0
[heads up] Nextclade v2.0
#101
fanninpm
closed
2 years ago
2
Update to V3 (DSL2)
#100
erinyoung
closed
2 years ago
0
creation of a parameter schema
#99
k-florek
closed
1 year ago
2
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