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UPHL-BioNGS / Grandeur

UPHL's Reference Free Pipeline
GNU General Public License v3.0
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No images for snp-dists #221

Open SeanSierra-Patev opened 1 month ago

SeanSierra-Patev commented 1 month ago

Hello,

The analysis completes successfully, no errors, but the snp-dists folder contains only the .txt output

I've attached the snp matrix, heres my execution command, and some version info

nextflow run UPHL-BioNGS/Grandeur -profile docker,msa --fastas fastas/ --current_datasets

Nextflow version 24.04.4

snp_matrix.txt

erinyoung commented 1 month ago

I can confirm that this matrix throws an error. I just put in an issue to HeatCluster, and I hope it gets resolved soon.

SeanSierra-Patev commented 1 month ago

This is the second such instance, the attached matrix from a very different dataset also throws an error snp_matrix.txt

SeanSierra-Patev commented 1 month ago

Have I just missed an update change? I did find heatcluster output in its own folder. I had only been looking in the snp-dist output folder which formally contained the txt as well as the images.

Did I just miss a release note and cause a bunch of problems?

sorry!!!

erinyoung commented 1 month ago

I can't remember when heatcluster files went into their own folder.

So it's now working? But when I ran your SNP matrix with heatcluster it wasn't... hmmm....

SeanSierra-Patev commented 1 month ago

All I know is in my most recent run, analyzing that same species dataset but with new samples included, has produced a clustered and color-graded image in the heatcluster directory so as far as I'm concerned functionally its working!!

Thanks!

SeanSierra-Patev commented 1 month ago

I got one out of that large klebsiella dataset too

heatcluster

SeanSierra-Patev commented 4 weeks ago

ok its still being a little weird

image