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UPHL-BioNGS
/
Grandeur
UPHL's Reference Free Pipeline
GNU General Public License v3.0
23
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fastani summary file
#178
erinyoung
closed
6 months ago
1
Make panaroo/core_gene_alignment.aln optional
#177
erinyoung
closed
6 months ago
0
Summary file missing mlst type
#176
erinyoung
closed
6 months ago
0
Version check
#175
github-actions[bot]
closed
6 months ago
0
MultiQC not pulling in Mashtree or Heat Cluster images anymore
#174
hutchinsonmiri
closed
6 months ago
10
Version check
#173
github-actions[bot]
closed
6 months ago
0
Refactoring
#172
erinyoung
closed
6 months ago
9
Version check
#171
github-actions[bot]
closed
7 months ago
0
Version check
#170
github-actions[bot]
closed
7 months ago
0
Grandeur run failed during core genome alignment
#169
DrB-S
closed
7 months ago
30
Version check
#168
github-actions[bot]
closed
8 months ago
0
Version check
#167
github-actions[bot]
closed
8 months ago
0
Version check
#166
github-actions[bot]
closed
8 months ago
0
sorted csv files are missing from publishdir
#165
erinyoung
closed
6 months ago
0
Uncommitted changes blocking repository pull
#164
DrB-S
closed
7 months ago
2
Update 20231219
#163
erinyoung
closed
8 months ago
0
Version check
#162
github-actions[bot]
closed
8 months ago
1
MultiQC modules
#161
erinyoung
opened
9 months ago
0
Fix typo
#160
erinyoung
closed
8 months ago
1
Version check
#159
github-actions[bot]
closed
9 months ago
1
Kleborate missing resistance scores
#158
erinyoung
closed
6 months ago
0
Update 20231205
#157
erinyoung
closed
9 months ago
0
Version check
#156
github-actions[bot]
closed
9 months ago
1
Version check
#155
github-actions[bot]
closed
9 months ago
1
SNP Heat Map Scaling
#154
whottel
closed
8 months ago
14
Update 20231121
#153
erinyoung
closed
9 months ago
0
Version check
#152
github-actions[bot]
closed
9 months ago
1
Version check
#151
github-actions[bot]
closed
9 months ago
0
Update 20231115
#150
erinyoung
closed
10 months ago
0
replace phylogenetics with pathogensurveillance ?
#149
erinyoung
closed
6 months ago
1
Version check
#148
github-actions[bot]
closed
10 months ago
1
Update for refseq 221
#147
erinyoung
closed
6 months ago
0
Roary assembly metrics
#146
erinyoung
closed
6 months ago
1
Version check
#145
github-actions[bot]
closed
10 months ago
0
Version check
#144
github-actions[bot]
closed
10 months ago
1
Phylogenetic Analysis Odd Result
#143
whottel
closed
10 months ago
9
Add Mycobacterium abscessus genome
#142
erinyoung
closed
9 months ago
0
Update 20231024
#141
erinyoung
closed
10 months ago
0
Version check
#140
github-actions[bot]
closed
10 months ago
0
Update HeatCluster
#139
DrB-S
closed
11 months ago
0
Update 2023 10 17
#138
erinyoung
closed
11 months ago
0
Version check
#137
github-actions[bot]
closed
11 months ago
0
Update core genome analysis workflow
#136
erinyoung
closed
6 months ago
1
Add support for TB
#135
erinyoung
closed
6 months ago
8
Update 20231010
#134
erinyoung
closed
11 months ago
0
Version check
#133
github-actions[bot]
closed
11 months ago
0
Setting outgroup taxon to fastani reference
#132
DrB-S
closed
10 months ago
10
Set up gitpod
#131
erinyoung
closed
11 months ago
1
Allow for no fastani hits
#130
erinyoung
closed
11 months ago
5
Value labels and snp-dists failure
#129
DrB-S
closed
11 months ago
30
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