USDA-ARS-GBRU itsxpress issues

USDA-ARS-GBRU / itsxpress

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

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issues

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Plugin error from itsxpress with AVITI data (FASTQ quality value (45) above qmax (41)

#51 IrshadUlHaq1 opened 1 week ago
1
Retain untrimmed reads

#50 LukeLikesDirt opened 3 weeks ago
0
Update README.rst

#49 arivers closed 4 months ago
0
Installedits

#48 arivers closed 5 months ago
0
Update python-package-conda_TestAppleSilicon.yml

#47 seina001 closed 5 months ago
0
bioconda recipies and Apple arm64 (M1, M2,M3) hardware

#46 arivers closed 4 months ago
1
using ITSxpress with nanopore sequencing reads - error profile

#45 Robvh-git closed 4 months ago
2
Itsxpress v2 flankingregions trim gh issue

#44 seina001 closed 6 months ago
0
Conserved flanking regions are not fully trimmed from some sequences in paired-end mode

#43 ewmorr closed 5 months ago
3
how can i update this new version to my existed env

#42 25280841 closed 5 months ago
1
clustering behavior of itsxpress

#41 Robvh-git opened 9 months ago
3
Trimming primers before running ITS xpress

#40 dalofa opened 11 months ago
5
Version2

#39 seina001 closed 1 year ago
0
Version2

#38 seina001 closed 1 year ago
0
Adding merge V2 test

#37 seina001 closed 1 year ago
0
1.8.1 eol

#36 seina001 closed 1 year ago
0
Create python-package-conda.yml

#35 seina001 closed 1 year ago
0
Create python-package-conda.yml

#34 seina001 closed 1 year ago
0
Create python-package-conda.yml

#33 seina001 closed 1 year ago
0
Create python-package-conda.yml

#32 seina001 closed 1 year ago
0
fasta file being passed to vsearch

#31 austenapigo opened 1 year ago
7
Question about ITS extraction from metagenomes

#30 andressamv closed 1 year ago
1
q2-ITSxpress generates empty sequences?

#29 gabrielet opened 1 year ago
2
Cannot properly install on qiime2

#28 yoshinak1 closed 1 year ago
2
Setting versions and updating readme for EOL v1

#27 seina001 closed 2 years ago
0
Running ITSxpress in parallel

#26 LukeLikesDirt closed 5 months ago
1
Appears to merge reads, but can't write to file.

#25 bscottraven closed 5 months ago
5
ITS produces empty files after merging - No ITS start or stop sites detected

#24 science-chump closed 5 months ago
10
ITSexpress and DADA2 with novaseq

#23 science-chump closed 5 months ago
1
Q2-ITSxpress: File too small?

#22 brittonstrickland closed 5 months ago
1
Fix example (case 2)

#21 vmikk closed 9 months ago
0
merged q2_itsxpress into itsxpress

#20 MeghaNagarmunoli closed 3 years ago
1
ITSxpress not working with reverse complimented reads

#19 DGladish closed 3 years ago
4
ITSxpress detecting 3 ITS2 loci, same file ITSx detects 200000 ITS2 loci

#18 Andreas-Bio opened 4 years ago
7
itsxpress produces empty files after merging

#17 mfbeuq closed 4 years ago
2
Conda install not compatible with QIIME2 2019.10

#16 ppericard closed 5 months ago
6
Issue11

#15 arivers closed 4 years ago
0
A question

#14 chaibenl closed 4 years ago
6
Write SSU/LSU regions

#13 brendanf closed 5 months ago
2
Clearer error message when a fasta passed to vsearch is empty

#12 arivers closed 5 months ago
1
ITSx on reverse-complement

#11 wzacs1 closed 4 years ago
7
Fixes to issue 9

#10 arivers closed 5 years ago
0
BBMerge fails to merge reads

#9 pilpel-lab closed 5 years ago
6
Improper handling when no fungal sequences are found in a processed file

#8 arivers closed 5 years ago
4
added handling for missing tlen values in itsPosition objects

#7 arivers closed 6 years ago
0
Added sphinx docs

#6 arivers closed 6 years ago
0
Add unmerged

#5 arivers closed 6 years ago
1
Replacing old method for skbio.read

#4 kweber1 closed 6 years ago
1
Update main.py

#3 kweber1 closed 6 years ago
0
Changed seld to self in "with open(seld.seq_file, 'r') as f:"

#2 kweber1 closed 6 years ago
1