USF-HII snptk issues - Githubissues

USF-HII / snptk

USF HII SNP Toolkit - Analyze and translate SNP entries using NCBI dbSNP and related databases

GNU General Public License v3.0

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map-using-rs-id Duplicate Rsids Update

#18 j2moreno opened 4 years ago
0
Entries with AltOnly in SNPChrPosOnRef added to delete list

#17 countdigi opened 4 years ago
0
Snp found in NCBI dbSNP GRCh37 not found in GRCh38

#16 j2moreno opened 4 years ago
1
Change --output-prefix in map-using-coord and --map-using-rs-id to positional arg

#15 countdigi closed 4 years ago
0
Add feature keep-all-rsids to module snpid-from-coord

#14 j2moreno closed 4 years ago
1
Fix #12 - Add Dockerfile and .github/workflows/main.yml

#13 countdigi closed 4 years ago
0
Add Dockerfile and CI/CD

#12 countdigi closed 4 years ago
0
NCBI dbSNP GRCh37 VCF has multiple entries

#11 countdigi closed 4 years ago
6
Integrate hii_plink utility command into snptk

#10 j2moreno closed 4 years ago
0
Implement new snptk logic that will omit Snphistory and only use Rsmerge and dbsnp build 153

#9 j2moreno closed 4 years ago
1
Parse Rsmerge json file to extract information on merged snps for GRCh37 and GRCh38

#8 j2moreno closed 4 years ago
6
Parse GRCh37 vcf files into flat file for digestion into snptk

#7 j2moreno closed 4 years ago
5
Parse GRCh38 json files into flat file for digestion into snptk

#6 j2moreno closed 4 years ago
7
Snptk Software Update

#5 j2moreno closed 4 years ago
3
Add functionality to look for reactivated snps in SnpHistory

#3 j2moreno closed 4 years ago
3
Add functionality to look for reactivated snps in SnpHistory

#4 j2moreno closed 4 years ago
1
Handling chr:positions with more than one snp_id mappings

#2 j2moreno closed 4 years ago
1
Add support for new json dbsnp format

#1 j2moreno closed 4 years ago
0