django-anvil-consortium-manager

A Django app to manage Consortium AnVIL groups, workspaces, and access.

License: MIT

Developer set up

Initial setup

Clone the repository:

$ git clone git@github.com:UW-GAC/django-anvil-consortium-manager.git

Set up the environment:

$ hatch env create

Ask Ben to make a service account and register it with AnVIL.
Set an environment variable to specify the path to the service account credentials file:

$ export ANVIL_API_SERVICE_ACCOUNT_FILE="/<path>/<to>/<service_account>.json"

You can also create a .env file to store environment variables.

Run the example site:

hatch shell
python manage.py migrate
python manage.py createsuperuser
python manage.py runserver

Tests

To run quick tests:

hatch run tests

To run tests using a specific version of python and django:

hatch run test-sqlite.py3.12-5.0:test

To run the full set of tests using different python versions, different django versions, and different backends, run:

hatch run all

This will also run test coverage and create an html report to view.

Maria DB setup

By default, the Django settings file uses a SQLite backend for development. You can optionally use MariaDB instead for tests by following these steps.

Install MariaDB. Here are some notes:

One time setup via Macports (note that previous versions are broken on Apple ARM chips):

# Install ports.
sudo port install mariadb-10.5
sudo port install mariadb-10.5-server
sudo port select --set mysql mariadb-10.5

# Set up db.
sudo -u _mysql /opt/local/lib/mariadb-10.5/bin/mysql_install_db
sudo chown -R _mysql:_mysql /opt/local/var/db/mariadb-10.5

# Start the server.
sudo -u _mysql /opt/local/lib/mariadb-10.5/bin/mysqld_safe --datadir='/opt/local/var/db/mariadb-10.5' &

# Run secure installation script.
sudo /opt/local/lib/mariadb-10.5/bin/mysql_secure_installation

# Shut down and restart
sudo mysqladmin shutdown

# Properly starting and stopping the server
sudo port load mariadb-10.5-server
sudo port unload mariadb-10.5-server

One time database setup. Start mariadb with sudo mysql -u root -p, then run these commands:

# Create the django database.
CREATE DATABASE anvil_consortium_manager CHARACTER SET utf8;

# Create the django user.
CREATE USER django@localhost IDENTIFIED BY 'password';
CREATE USER django@127.0.0.1 IDENTIFIED BY 'password';

# Grant permissions to the django database for the django user.
GRANT ALL PRIVILEGES ON anvil_consortium_manager.* TO django@localhost;
GRANT ALL PRIVILEGES ON anvil_consortium_manager.* TO django@127.0.0.1;

# Same for test database.
CREATE DATABASE test_anvil_consortium_manager CHARACTER SET utf8;
GRANT ALL PRIVILEGES ON test_anvil_consortium_manager.* TO django@localhost;
GRANT ALL PRIVILEGES ON test_anvil_consortium_manager.* TO django@127.0.0.1;

# Apply changes.
> FLUSH PRIVILEGES;

To run tests using MariaDB as the backend, run:

hatch run test-mysql.py3.11-4.2:test

If you run into errors with mysqclient>=2.2, you may need to set some environment variables before installing mysqlclient:

export PKG_CONFIG_PATH="/opt/local/lib/mariadb-10.5/pkgconfig/"
export MYSQLCLIENT_LDFLAGS=`pkg-config --libs libmariadb`
export MYSQLCLIENT_CFLAGS=`pkg-config --cflags libmariadb`

Creating a new release

Check out the main branch
```
git checkout main
```
Create a new branch with naming convention release/vX.Y.Z.
```
git checkout -b release/vX.Y.Z
```
Update the version number in anvil_consortium_manager/__init__.py. Select major, minor, or patch based on standard semantic versioning principles.
```
hatch version <major,minor,patch>
```
Update the CHANGELOG to include the release version and date
Push the branch to GitHub
```
git push -u origin release/vX.Y.Z
```
Create a pull request on GitHub to merge the release branch into main.
After the pull request is approved and merged, create a new release on GitHub with the same version number as the release branch.
1. From the main page of the repository, click on the "Releases" tab.
2. Click on the "Draft a new release" button.
3. Enter the tag version (e.g. vX.Y.Z) and the release title (e.g. vX.Y.Z).
4. Click on the "Generate release notes" button.
5. Click on "Publish release".

UW-GAC / django-anvil-consortium-manager

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