UcarLab AMULET issues - Githubissues

UcarLab / AMULET

A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

https://ucarlab.github.io/AMULET/

GNU General Public License v3.0

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issues

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human autosomes list of Amulet vs fragment file

#25 Erfan1369 opened 1 month ago
4
down stream analysis after running AMULET.sh

#24 Erfan1369 opened 4 months ago
5
Amulet output contains only Overlap file, there is no overlaps summary

#23 jasiozaucha opened 9 months ago
6
Update human_autosomes.txt

#22 alexlenail opened 1 year ago
0
Count Matrix before binarization and artificial doublets simulation

#21 Yuntian0716 opened 2 years ago
3
Use with outputs of scATAC-pro

#20 jonhsussman opened 2 years ago
2
Truncated jar exceptions - Test files missing

#19 VangelisTheodorakis opened 2 years ago
1
Troubles with running doublet annotation part

#18 AtaiDobrynin opened 2 years ago
13
Can AMULET identify doublets with relatively low read counts from cells with a wide range of read counts

#17 Yydtqqqg opened 2 years ago
9
How to individually evaluate simulated artificial doublets

#16 Yydtqqqg closed 2 years ago
3
how can i find known repetitive elements like restrictionlist_repeats_segdups_rmsk_hg19.bed ?

#15 tianchen2019 closed 2 years ago
6
Cannot Run Multiplet Detection Vignette

#14 Yydtqqqg closed 2 years ago
2
Low no. of multiplets detected than expected

#13 AnjaliC4 opened 3 years ago
1
passing a list of barcodes

#12 AnjaliC4 closed 3 years ago
0
Multiome input

#11 tinakeshav opened 3 years ago
8
homotypic vs heterotypic multiplet output files

#10 AnjaliC4 opened 3 years ago
1
Labels cycling cells as doublets

#9 mzhibo opened 3 years ago
2
Comment lines in fragments

#8 Zepeng-Mu closed 3 years ago
1
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed

#7 rylanci closed 3 years ago
3
empty overlaps.txt

#6 AnjaliC4 closed 3 years ago
6
Fragment files as input?

#5 caleblareau closed 3 years ago
1
Doesn't run

#4 cnk113 closed 3 years ago
6
how can I change this parameter MAPQTHRESHOLD=30 to 10?

#3 ChengxiangQiu closed 3 years ago
3
there is no such a file snATACOverlapCounter.jar

#2 ChengxiangQiu closed 3 years ago
1
Pre-print/manuscript available soon?

#1 porchard closed 3 years ago
2