issues
search
UcarLab
/
AMULET
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
https://ucarlab.github.io/AMULET/
GNU General Public License v3.0
29
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
down stream analysis after running AMULET.sh
#24
Erfan1369
opened
2 months ago
5
Amulet output contains only Overlap file, there is no overlaps summary
#23
jasiozaucha
opened
7 months ago
6
Update human_autosomes.txt
#22
alexlenail
opened
1 year ago
0
Count Matrix before binarization and artificial doublets simulation
#21
Yuntian0716
opened
1 year ago
3
Use with outputs of scATAC-pro
#20
jonhsussman
opened
2 years ago
2
Truncated jar exceptions - Test files missing
#19
VangelisTheodorakis
opened
2 years ago
1
Troubles with running doublet annotation part
#18
AtaiDobrynin
opened
2 years ago
13
Can AMULET identify doublets with relatively low read counts from cells with a wide range of read counts
#17
Yydtqqqg
opened
2 years ago
9
How to individually evaluate simulated artificial doublets
#16
Yydtqqqg
closed
2 years ago
3
how can i find known repetitive elements like restrictionlist_repeats_segdups_rmsk_hg19.bed ?
#15
tianchen2019
closed
2 years ago
6
Cannot Run Multiplet Detection Vignette
#14
Yydtqqqg
closed
2 years ago
2
Low no. of multiplets detected than expected
#13
AnjaliC4
opened
2 years ago
1
passing a list of barcodes
#12
AnjaliC4
closed
2 years ago
0
Multiome input
#11
tinakeshav
opened
2 years ago
8
homotypic vs heterotypic multiplet output files
#10
AnjaliC4
opened
2 years ago
1
Labels cycling cells as doublets
#9
mzhibo
opened
2 years ago
2
Comment lines in fragments
#8
Zepeng-Mu
closed
3 years ago
1
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed
#7
rylanci
closed
3 years ago
3
empty overlaps.txt
#6
AnjaliC4
closed
3 years ago
6
Fragment files as input?
#5
caleblareau
closed
3 years ago
1
Doesn't run
#4
cnk113
closed
3 years ago
6
how can I change this parameter MAPQTHRESHOLD=30 to 10?
#3
ChengxiangQiu
closed
3 years ago
3
there is no such a file snATACOverlapCounter.jar
#2
ChengxiangQiu
closed
3 years ago
1
Pre-print/manuscript available soon?
#1
porchard
closed
3 years ago
2