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VCCRI
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Sierra
Discover differential transcript usage from polyA-captured single cell RNA-seq data
GNU General Public License v3.0
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Question on counting overlapping peaks
#72
HenriettaHolze
opened
1 month ago
1
Can I force Sierra to include exons from gtf?
#71
HenriettaHolze
closed
1 month ago
2
Changes in gene 3'UTR length
#70
TianYu-828
opened
5 months ago
1
Interpretation of log2 fold changes in the result
#69
Kyung-TaeLee
opened
8 months ago
1
PlotRelativeExpressionUMAP - can an additional function be added to bring out cells that are buried in the UMAP plot?
#68
ckong18
opened
9 months ago
0
Coordinates of peaks across junctions after merging
#67
chvandijk
closed
11 months ago
5
Error in PlotRelativeExpression functions
#66
hkarakurt8742
opened
12 months ago
1
CountPeaks error when using Singleron Biotechnologies 3'-end BAM files
#65
hkarakurt8742
closed
12 months ago
4
Using Sierra with Singleron Biotechnologies Platform
#64
hkarakurt8742
closed
1 year ago
1
Getting "Error in (function (x) : attempt to apply non-function"
#63
alanlamsiu
opened
1 year ago
3
Paired-end & PlotRelativeExpression functions.
#62
OnegItzhak
closed
1 year ago
1
MergePeakCoordinates takes long time！
#61
cghchuwudai
closed
1 year ago
9
issues with generating splice junction file
#60
ckong1806
opened
1 year ago
7
is it possible to generate a plot that shows global 3'UTR length change?
#59
ntsopoul
opened
1 year ago
0
[E::hts_open_format] Failed to open file
#58
ntsopoul
closed
1 year ago
1
Sierra dataframe has 0 length
#57
top334
opened
1 year ago
1
DUTest function Error
#56
hkarakurt8742
opened
1 year ago
1
FindPeaks Error--'x' values larger than vector length 'sum(width)'
#55
Jun2BCR
opened
1 year ago
2
Cellranger mkref function parameters for Sierra
#54
hkarakurt8742
opened
1 year ago
1
Generate GitHub Releases
#53
mfansler
opened
2 years ago
2
Chromosome name in FindPeaks // Help with Output
#52
Romeo1-1
closed
2 years ago
3
Does the Sierra package have a detailed protocol, I would like to find.
#51
liuyu988
opened
2 years ago
1
Which alignment method and indexing options are suitable to use with Sierra?
#50
hkarakurt8742
closed
2 years ago
3
CoveragePlot error with 'zoom_3UTR=TRUE '
#49
BettinaNa
opened
2 years ago
1
Error when running CountPeaks
#48
idupanloup
opened
2 years ago
8
peak discrepancy
#47
cag1343
opened
2 years ago
1
Error in peak calling
#46
idupanloup
closed
2 years ago
2
Using data with batch effects in Sierra
#45
hkarakurt
closed
2 years ago
2
3'end database
#44
cag1343
closed
2 years ago
2
umap coordinates for NewPeakSeurat
#43
leeanapeters
opened
2 years ago
3
multithreading is not working for apply_DEXSeq_test_seurat module
#42
AidenSb
closed
2 years ago
2
Error in CountPeaks step
#41
johnchamberlin
closed
3 years ago
2
PlotRelativeExpressionBox looks for tSNE
#40
GeertvanGeest
closed
3 years ago
2
DUTest() with genes containg ':' or space
#39
GeertvanGeest
closed
3 years ago
1
ignore quotes while reading peak.sites.file
#38
GeertvanGeest
closed
3 years ago
2
Problems reading genes with a quote (') in the name
#37
GeertvanGeest
closed
3 years ago
1
Using STARSolo SJ.out.tab?
#36
cnk113
opened
3 years ago
4
Error in CountPeaks()
#35
fciamponi
closed
3 years ago
5
Error in x$.self$finalize()
#34
AidenSb
opened
3 years ago
6
PeakSeuratFromTransfer error
#33
Nbalb
opened
3 years ago
1
GTF problem
#32
Lianqw
closed
3 years ago
2
Clarification on UMI counting
#31
cnk113
closed
3 years ago
2
User-defined pseudo-bulk samples?
#30
borshago
opened
3 years ago
1
Interpret results
#29
Vivianstats
closed
3 years ago
4
Error in SplitBam (extra argument to Rsamtools::ScanBamParam)
#28
borshago
closed
3 years ago
1
Error in DUTest
#27
soobeomlee
closed
3 years ago
5
failed re-building ‘Sierra_vignette.rmd’
#26
Pchaskar
closed
3 years ago
1
Installation error on R.3.6.2
#25
hmgene
closed
3 years ago
2
installation erro
#24
AidenSb
closed
3 years ago
7
PeakSeuratFromTransfer or NewPeakSeurat Error
#23
aralbright
closed
3 years ago
7
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