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VDBWRAIR
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ngs_mapper
Genome Mapping Pipeline
GNU General Public License v2.0
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Faster filter pool
#228
averagehat
closed
8 years ago
0
Faster filter pool
#227
necrolyte2
closed
8 years ago
4
Fixes issue where MiSeq reads were not being tagged correctly(#221)
#226
necrolyte2
closed
8 years ago
0
Consider Continous Delivery
#225
averagehat
opened
8 years ago
3
Error version 1.4.0 - index issue? Error needs to be more informative?
#224
mmelendrez
closed
8 years ago
9
RUNSAMPLEOPTIONS not working on version 1.4.0?
#223
mmelendrez
closed
8 years ago
4
Make correct docs easy to find
#222
averagehat
closed
8 years ago
7
tagreads broken?
#221
necrolyte2
closed
8 years ago
4
change some files to .gz to ensure pipeline changes work
#220
necrolyte2
closed
8 years ago
1
Output cleanup
#219
necrolyte2
closed
8 years ago
1
waffle.io Badge
#218
waffle-iron
closed
8 years ago
0
read duplication
#217
necrolyte2
opened
8 years ago
4
Travis: ImportError: No module named _markerlib
#216
averagehat
closed
8 years ago
4
Faster filter
#215
averagehat
closed
8 years ago
7
Formats
#214
averagehat
closed
8 years ago
3
recursion depth error...
#213
mmelendrez
closed
8 years ago
4
Support sanger ab1 files
#212
necrolyte2
closed
8 years ago
6
Should samplesheet support absolute path to data?
#211
necrolyte2
opened
8 years ago
3
v1.4.1
#210
necrolyte2
closed
8 years ago
0
Error when running slow_tests.sh
#209
necrolyte2
closed
8 years ago
1
Updating samtools to get rid of bam merge bug
#208
necrolyte2
closed
8 years ago
2
igv support for installation
#207
necrolyte2
closed
8 years ago
0
Log files contain no useful information for debugging
#206
necrolyte2
opened
8 years ago
4
trimmed_reads directory contains filenames that start with filtered
#205
necrolyte2
opened
8 years ago
1
what is ngs_filter doing?
#204
necrolyte2
closed
8 years ago
3
Include IGV in requirements file
#203
necrolyte2
closed
8 years ago
0
Pipeline failing during running bwa stage
#202
necrolyte2
closed
8 years ago
2
install.sh improvements
#201
necrolyte2
closed
8 years ago
1
pyBWA trying to install bwa even though it should exist
#200
necrolyte2
opened
8 years ago
1
add --fasta flag and test
#199
averagehat
closed
8 years ago
4
Documentation references runsample-output-directory that does not exist
#198
necrolyte2
opened
8 years ago
0
Documentation contains Redmine formatting
#197
necrolyte2
opened
8 years ago
0
Feature request - standardized scale in a single run for QualDepth graphics?
#196
mmelendrez
opened
8 years ago
5
changelog. version bump. doc fix
#195
necrolyte2
closed
8 years ago
0
fix `sh` logging level
#194
averagehat
closed
8 years ago
0
Primer samplesheet
#193
averagehat
closed
8 years ago
1
Logging configuration
#192
necrolyte2
closed
8 years ago
0
Primer samplesheet
#191
necrolyte2
closed
8 years ago
1
Syntax error in nfilter.py
#190
necrolyte2
closed
8 years ago
1
NGS_MAPPER error
#189
InaMBerry
closed
8 years ago
6
Travis investigate
#188
necrolyte2
closed
8 years ago
2
check primer file exists
#187
averagehat
closed
8 years ago
0
Release 1.4.0
#186
averagehat
closed
8 years ago
3
Support Primer File
#185
averagehat
closed
8 years ago
1
Add primer trimming in trim_reads
#184
necrolyte2
closed
8 years ago
1
Conda install
#183
necrolyte2
closed
8 years ago
4
Remove pyBWA dependency?
#182
necrolyte2
opened
8 years ago
0
Release 1.3.0
#181
necrolyte2
closed
8 years ago
1
DOI needed for ngs_mapper for citation - please create per instructions
#180
mmelendrez
closed
8 years ago
1
ngs_filter[dev]
#179
necrolyte2
closed
8 years ago
0
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