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VGP / vgp-assembly

VGP repository for the genome assembly working group
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QUESTION: Does mitoVGP need pacbio RAW data (BAM) files as input? #53

Closed cement-head closed 3 years ago

cement-head commented 3 years ago

Or can it accept FASTQ files?

gf777 commented 3 years ago

Yes, because the bam is required by Arrow for polishing.

cement-head commented 3 years ago

(1) Please stop closing issues that are still in discussion. (2) So, does mitoVGP need the entire PacBioSII output folder, or just the file(s)?

gf777 commented 3 years ago

Hi @cement-head ,

sorry since the question was answered I wanted to avoid forgetting closing the topic. You need the subreads.bam, given as a txt list of files to the option -1