Open amit4mchiba opened 1 year ago
Hi,
I tried running build.sh, and it seems that it will create a telomere.jar file and all the java files are created (I am guessing although not sure). I am not sure as what file format and content will be for ,ends. and ,asm.csv.? Also, what is threshold here? I mean, what 0.4 means?
I wonder if it will be possible to provide an example folder or smthing like that which will allow to understand as how it works.
thank you in advance,
regards Amit
Hi,
I wanted to run your telomere search pipeline, but I am not able to. I downloaded the github, and then tried running the telomere_analysis.sh, but i keep getting error that fasta file is not found, but I am giving the correct address. I adjusted the script and added path for the VGP_PIPELINE assuming that is causing the issue, but probably not. I am not sure if what I am doing is correct, and will really appreciate your help to guide me as how to run this program and get the results.
thank you so much,
regards Amit