How can I use ascat.prepareHTS to get the LogR and BAF file for tumor-only samples?

VanLoo-lab / ascat

ASCAT R package

https://www.mdanderson.org/research/departments-labs-institutes/labs/van-loo-laboratory/resources.html#ASCAT

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How can I use ascat.prepareHTS to get the LogR and BAF file for tumor-only samples? #138

Closed suyanxun closed 1 year ago

tlesluyes commented 1 year ago

Hi @suyanxun,

As mentioned in the documentation, ascat.prepareHTS does require tumour/normal pairs so you can't use it for unmatched tumours. More information [here]{https://github.com/VanLoo-lab/ascat/issues/134}.

Cheers,

Tom.