Closed bwubb closed 7 months ago
I may need more details to answer your question, like what mode of ASCAT are your using? About the sample you removed, did you remove matched tumors as well? Have you tried as your add those samples back?
Removing the normals and their tumor pairs did get passed the error. In hindsight this should have been the obvious thing to test, my apologizes. Thank you for the replay.
Greetings,
I am receiveing the following error during prepareTargetedSeq
I believe there are 4 or 5 normal samples that are removed for low coverage or low snps. Could that be the cause? I was able to successfully run ASCAT in a smaller 3 tumor/normal pair selection, but when I extend the analysis to the full set (147 pairs), I can not get through this step.
Thank you
-bwubb