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VanLoo-lab / ascat

ASCAT R package
https://www.mdanderson.org/research/departments-labs-institutes/labs/van-loo-laboratory/resources.html#ASCAT
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Error in png #68

Closed StefaniaTuveri closed 4 years ago

StefaniaTuveri commented 4 years ago

Hello,

I have a problem while running ASCAT:

ascat.plotRawData(ascat.bc) [1] Plotting tumor data Error in png(filename = file.path(img.dir, paste(img.prefix, ASCATobj$samples[i], : X11 is not available

Do you have any suggestion about how to solve it?

tlesluyes commented 4 years ago

Hi,

This is typically due to a R misconfiguration in which X11 isn't working. It's a pretty common R error and the way to fix it varies, depending on your operation system. Here is a link for Mac OS and Ubuntu (https://stackoverflow.com/questions/36819334/x11-is-not-available-in-r).

Cheers,

Tom.

StefaniaTuveri commented 4 years ago

Thank you very much. I solved :)

Best regards, Stefania