VirtualFlyBrain pipeline issues

VirtualFlyBrain / pipeline

A repository for amalgamating pipeline issue tickets and general VFB pipeline doc

https://hub.docker.com/repository/docker/virtualflybrain/pipeline

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issues

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Refactoring LoadPDB2 jenkins job for Neo4j ver 4.2 and ensuring latest code/schema used

#77 Robbie1977 opened 2 months ago
0
upgrade to Pipeline2

#76 Robbie1977 closed 2 years ago
0
Pipeline2 fields sideloaded as String not List<String> as per schema

#75 Robbie1977 opened 4 years ago
1
Set up p2.virtualflybrain.org geppetto instance

#74 dosumis opened 4 years ago
3
Set up p2 post proc pipeline

#73 dosumis opened 4 years ago
0
adding Owl Labels

#72 Robbie1977 closed 4 years ago
0
Document KB2Prod for the purpose of getting rid of it.

#71 matentzn closed 4 years ago
2
Move pipeline tests to Jenkins (avoiding Travis timeout)

#70 dosumis opened 5 years ago
1
Pipeline Collect data seems "unhealthy"

#69 matentzn closed 5 years ago
3
Make sure pipeline 2 data collection volume is cleared when pipeline is re-built

#68 matentzn closed 5 years ago
2
Update process.sh

#67 dosumis closed 5 years ago
0
Update process.sh

#66 dosumis closed 5 years ago
3
Pub pipeline fixes

#65 dosumis closed 5 years ago
1
Data collection - Implement various preprocessing steps (Inference) using ROBOT

#64 matentzn closed 4 years ago
1
Migrate to KB 2.0

#63 matentzn closed 5 years ago
1
Consider factoring out Flybase features and synthetic classes from KB pipeline

#62 matentzn closed 4 years ago
1
docker-compose -> Make sure pipeline executes in correct order

#61 matentzn closed 5 years ago
0
Run vfb-pipeline-owlery against deployed

#60 matentzn closed 5 years ago
0
Run vfb-pipeline-prod against deployed

#59 matentzn closed 5 years ago
0
Run vfb-pipeline-updatetriplestore

#58 matentzn closed 5 years ago
0
Run vfb-pipeline-collectdata against deployed

#57 matentzn closed 5 years ago
0
Deploy vfb-owlery2

#56 matentzn closed 5 years ago
0
Deploy vfb-prod2

#55 matentzn closed 5 years ago
1
Deploy yyz1989/rdf4j

#54 matentzn closed 5 years ago
0
Deploy vfb-integration-api

#53 matentzn closed 5 years ago
0
Document pipeline 2.0

#52 matentzn closed 5 years ago
3
Check and test pub pipeline

#51 dosumis closed 5 years ago
0
Dockerise "update triplestore"

#50 matentzn closed 6 years ago
0
Dockerise data collection (V1)

#49 matentzn closed 6 years ago
0
Extend current KB docker to include new plugin

#48 matentzn closed 6 years ago
0
Dockerise KB transformation to new schema

#47 matentzn closed 6 years ago
0
Docker for KB schema verification

#46 matentzn closed 6 years ago
0
Ensure than owlery instance returns same as AberOWL

#45 matentzn closed 6 years ago
0
Create new, lean SOLr core for VFB 2.x

#44 matentzn closed 4 years ago
1
Implement generic typing system for neo nodes

#43 matentzn closed 4 years ago
3
Remove need for post processing on PDB

#42 Robbie1977 opened 6 years ago
2
Two extraneous Anatomy Individual nodes being created during production DB loading

#41 Robbie1977 closed 6 years ago
3
unicode error spotted during jenkins pipeline load

#40 Robbie1977 opened 6 years ago
1
Set up Jenkins KBW loading job for curation

#39 dosumis opened 6 years ago
0
Set up Jenkins loader for KB curation platform

#38 dosumis opened 6 years ago
0
Get KB loading code working from curation repo

#37 dosumis opened 6 years ago
0
Get basic travis checks working for curation (well-formed? Class lookup)

#36 dosumis opened 6 years ago
0
metaspec Add JSON schema + checks for YAML spec file

#35 dosumis opened 6 years ago
0
Refine KB curation TSV format based on feedback from Gillian

#34 dosumis opened 6 years ago
0
Standardise TSV format for adding new images & their annotation to KB

#33 dosumis opened 6 years ago
0
Replace with tested Python3only pipeline

#32 Robbie1977 closed 6 years ago
0
Set up staging area + travis checks for TSVs specifying new content to be loaded into KB

#31 dosumis opened 6 years ago
1
flipping edges as last step

#30 Robbie1977 closed 6 years ago
0
Write formal documentation of new neo4j to OWL mapping

#29 dosumis closed 6 years ago
2
Write test mode wrappers for all scripts used in pipeline

#28 dosumis opened 6 years ago
0