NHP_Freesurfer

This repo contains a number of Jupyter Notebooks that will guide you through the segmentation and surface generation of monkey brains using Freesurfer, the NMT template, and other tools.

Requirements

The requirements are listed in each notebook separately.

Contact

c.klink@nin.knaw.nl or open an issue in the repo

Publications that refer to this software package

• Klink et al. (2021) Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex. eLife, DOI: 10.7554/eLife.67304
• Messinger et al. (2021). A collaborative resource platform for non-human primate neuroimaging. NeuroImage, 226, 117519. DOI: 10.1016/j.neuroimage.2020.117519