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Vitek-Lab
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MSstats
R package - MSstats
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Importing DIANN in MSstats shiny
#94
NinaRadzey
closed
1 year ago
1
Aggregate function missing: defaulting to length
#93
kkw5710
closed
1 year ago
9
improved definition of ref column
#92
mstaniak
closed
1 year ago
0
Differential analysis when there is only protein level data
#91
Mengbo-Li
closed
1 year ago
5
Contribution guidelines and unit testing
#90
jspaezp
closed
1 year ago
3
Hotfix infinitelog2fc
#89
mstaniak
closed
1 year ago
0
No GroupBySubject in designSampleSize: fit is not lmerMod
#88
hanna6703
closed
8 months ago
1
Error with dataProcess
#87
xyztlmercury
closed
8 months ago
5
Spectronaut filtering
#86
mstaniak
opened
2 years ago
0
two errors about dataProcess()
#85
Douerww
opened
2 years ago
0
Hotfix biodata pkg
#84
mstaniak
closed
1 year ago
0
the values of pvalue and adj.pvalue are NaN in DDA2009.comparisons[["ComparisonResult"]]
#83
Douerww
closed
2 years ago
14
Values below 1 being set to 1 in dataProcess function
#82
ebrombacher
closed
2 years ago
4
Check build error on Windows (Bioc)
#81
mstaniak
closed
1 year ago
1
Only partial results from dataProcess
#80
hanna6703
closed
2 years ago
1
"ref" column definition
#79
mstaniak
closed
1 year ago
0
fixed counting ProfilePlot files
#78
mstaniak
closed
1 year ago
0
added censoredInt parameter to dataProcessPlots
#77
mstaniak
closed
1 year ago
0
Point shape to indicate imputation on plots
#76
mstaniak
opened
3 years ago
4
Hotfix fractions check
#75
mstaniak
closed
1 year ago
0
Msstats summarize features with 1 measurement
#74
Niveda-S
closed
3 years ago
4
dataProcess with peptides mapping to multiple proteins errors
#73
Niveda-S
closed
3 years ago
2
Error in MSstatsContrastMatrix.matrix(contrast.matrix, groups) : Assertion on 'colnames of contrast matrix' failed: Must be equal to set {'Condition1','Condition2','Condition3','Condition4'}, but is {}.
#72
maria-lagerholm
closed
3 years ago
2
Wrong x-axis name on groupComparisonPlots
#71
jinyi12
closed
3 months ago
3
dataProcess function : error. but log says that summarization is done
#70
MeenaChoi
closed
3 years ago
3
Plot labels order
#69
mstaniak
opened
3 years ago
0
Functions for creating reproducible examples
#68
mstaniak
closed
3 months ago
0
question about dataProcess
#67
hemingwang
closed
3 years ago
4
removed log
#66
mstaniak
closed
1 year ago
0
Bug in merging fractions
#65
mstaniak
closed
2 years ago
7
[WIP] fixed a bug in gCPlots
#64
mstaniak
closed
3 years ago
1
Remove linear summarization?
#63
mstaniak
closed
3 years ago
0
proper interface for dataProcess and groupComparison outputs
#62
mstaniak
opened
3 years ago
2
update global standards normalization
#61
mstaniak
closed
1 year ago
0
censoredInt = NULL
#60
mstaniak
opened
3 years ago
1
gloabla standard peptides processing error
#59
MASHUOA
closed
2 years ago
2
Check if nrow(input) > 0 before merging annotation
#58
mstaniak
closed
3 years ago
1
Error in dataProcess()
#57
Douerww
closed
3 years ago
34
Limits maximum length of protein label (heatmap)
#56
mstaniak
closed
3 years ago
0
Too long protein names in groupComparisonPlots heatmap
#55
mstaniak
closed
3 years ago
0
Merge pull request #53 from Vitek-Lab/hotfix-srm-skyline
#54
MeenaChoi
closed
3 years ago
0
Hotfix srm skyline
#53
mstaniak
closed
3 years ago
0
Sync with master
#52
mstaniak
closed
3 years ago
0
Sync with Bioc RELEASE_3_13
#51
mstaniak
closed
3 years ago
0
Sync with master
#50
mstaniak
closed
3 years ago
0
Fix a bug in SRM Skyline converter
#49
mstaniak
closed
3 years ago
1
MSstats v4
#48
mstaniak
closed
3 years ago
0
How to save list of the differentially abundant proteins as output file (.txt, .tsv or .csv)
#47
BenSamy2020
closed
3 years ago
0
Typo in SpectronauttoMSstatsFormat funciton
#46
ghost
closed
3 years ago
0
Safeguard against failing "augment" of failed robust lm fits in outlier detection
#45
jpfeuffer
closed
3 years ago
1
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