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WGLab
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NanoCaller
Variant calling tool for long-read sequencing data
MIT License
90
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8
forks
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Applications
#45
QuentinPerriere
opened
2 months ago
12
Error phasing large chromosomes (550mb chromosome) due to inability to store as tbi index
#44
jcolicchio-soundag
closed
2 months ago
3
Module not found tqtm after install with conda
#43
RxLoutre
opened
3 months ago
1
Models for R10.4.1 dorado
#42
mbhall88
opened
5 months ago
0
conda install incompatibilities
#41
jannafierst
opened
8 months ago
2
Supporting reads
#40
jamesdalg
closed
8 months ago
3
TypeError
#39
mansi-aai
closed
10 months ago
2
AD (allelic depth) field
#38
jamesdalg
closed
11 months ago
5
Unnormal results !
#37
AzizHN
opened
1 year ago
8
header error in variant_calls.snps.phrased.vcf.gz
#36
AzizHN
opened
1 year ago
6
what do you want to fill in the “--chrom” option? I read the instructions and there is no document.
#35
oranges7
opened
1 year ago
22
bam file issue!
#34
g-s-2018
opened
1 year ago
0
Failed installation
#33
twesigomwedavid
opened
1 year ago
2
Update indelCaller.py
#32
sbassi
closed
1 year ago
0
Models compatible with Guppy6.x.x
#31
sagnikbanerjee15
opened
1 year ago
1
docker build fails due to missing NanoCaller_WGS file
#30
sbassi
closed
9 months ago
2
bcf tools error and error in whatshap
#29
kprabhu-soundag
opened
1 year ago
4
Using NanoCaller with BED files and Indel Calling Gives Empty VCF files
#28
hkarakurt8742
opened
1 year ago
3
High coverage genotyping outputs only G
#27
rhinempi
opened
2 years ago
10
NanoCaller for microbial genomes
#26
rhinempi
opened
2 years ago
0
index file .fai error
#25
Meirom-Michal
opened
2 years ago
2
The output data is now only an args file (previously several vcf files were generated).
#24
erarin
closed
2 years ago
0
AttributeError: tuple object has no attribute ndims
#23
bbalog87
opened
2 years ago
1
Link to HiFi trained models
#22
bbalog87
opened
2 years ago
2
multisample SNP calling?
#21
colindaven
closed
2 years ago
7
ONT Indel calling on polyploid plant
#20
HenrivdGeest
opened
2 years ago
0
provide the pre-trained model in other websites
#19
huangnengCSU
closed
2 years ago
2
"-phase_bam" doesn't work
#18
moeinzadeh
closed
2 years ago
1
Error: Resource temporarily unavailable
#17
huangnengCSU
closed
2 years ago
4
failed log report
#16
aguygarner
closed
2 years ago
2
Runtime
#15
Akazhiel
opened
2 years ago
7
Calling on chromosome X
#14
Akazhiel
closed
2 years ago
1
Upgrade model to tensorflow 2
#13
Akazhiel
opened
3 years ago
1
ls: cannot access '/output/intermediate_files/*/*snps.vcf.gz': No such file or directory
#12
KewinOgink
closed
3 years ago
5
info required on duplicate reads
#11
tahashmi
closed
3 years ago
6
Fail to do variant calling
#10
PanZiwei
closed
3 years ago
15
AttributeError: module 'tensorflow' has no attribute 'contrib'
#9
pvap3
closed
3 years ago
2
Low F1 score for NA12878
#8
illarionovaanastasia
closed
3 years ago
11
Not calling variant present in bam
#7
Mailinnia
opened
3 years ago
2
extract whole genome SNP and haplotype
#6
qiang-huang
opened
3 years ago
3
Issue --end flag resquested in whole alignment Nanocaller
#5
AG-Run
opened
3 years ago
6
update readme example
#4
jimhavrilla
closed
3 years ago
0
ValueError: invalid literal for int() with base 10: ''
#3
MarleyCodes
opened
3 years ago
1
NANOCALLER WITH NANOPORE BACTERIA READS
#2
vappiah
opened
4 years ago
2
usage information
#1
kaichop
opened
5 years ago
4