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WayScience
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Benchmarking_NF1_data
Benchmarking data processing strategies for Cell Painting data of NF1 Schwann cells. See analysis repository (https://github.com/WayScience/NF1_SchwannCell_data_analysis) for information on how the data was interpreted.
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Rename github repo
#45
gwaybio
closed
1 year ago
2
Current CP illum pipeline is not automated + saves images as different bit depth
#44
jenna-tomkinson
opened
1 year ago
1
Add platemap visualization
#43
gwaybio
opened
1 year ago
7
Correct cp pipeline and rerun
#42
jenna-tomkinson
closed
1 year ago
7
ComplexHeatmap error for Pybasic Cellpose pipeline
#41
jenna-tomkinson
opened
1 year ago
0
MeasureImageIntensity not measuring whole image intensity
#40
jenna-tomkinson
closed
1 year ago
1
Lack of generalized notebook/function to run extraction through all plates
#39
jenna-tomkinson
closed
1 year ago
1
Run plates with cp pipelines
#38
jenna-tomkinson
closed
1 year ago
1
Missing index.csv file in DP Projects
#37
gwaybio
opened
1 year ago
0
Revert "run plate 2 through cp and extract sc"
#36
jenna-tomkinson
closed
1 year ago
1
run plate 2 through cp and extract sc
#35
jenna-tomkinson
closed
1 year ago
0
Improved CellProfiler segmentation parameters -> Need to rerun Plate 1
#34
jenna-tomkinson
closed
1 year ago
1
perform IC on plate 2
#33
jenna-tomkinson
closed
1 year ago
1
Linear model and power analysis for both DP feature sets
#32
gwaybio
opened
1 year ago
1
DP feature linear modeling and visualization
#31
gwaybio
closed
1 year ago
1
Perform power analysis for CP features
#30
gwaybio
closed
1 year ago
0
Create umap figure with ggplot
#29
gwaybio
closed
1 year ago
1
DeepProfiler data stat analysis
#28
jenna-tomkinson
closed
1 year ago
0
Create ComplexHeatmaps for Pilot Data plate 1
#27
gwaybio
closed
1 year ago
0
Add linear model analysis
#26
gwaybio
closed
1 year ago
2
Visualizing the KS test results
#25
gwaybio
closed
1 year ago
3
Linking single cells between DeepProfiler projects
#24
jenna-tomkinson
opened
1 year ago
0
deepprofiler project processing features
#23
jenna-tomkinson
closed
1 year ago
3
heatmap and ks-test analysis
#22
jenna-tomkinson
closed
1 year ago
0
NF1 UMAP Stats
#21
jenna-tomkinson
closed
1 year ago
3
Second Plate Issues
#20
jenna-tomkinson
closed
1 year ago
1
Add second NF1 dataset and correct the images
#19
jenna-tomkinson
closed
1 year ago
2
Re-run pipelines with updated platemap
#18
gwaybio
closed
1 year ago
1
Edit 4_processing_features module
#17
jenna-tomkinson
closed
1 year ago
2
Apply pycytominer-transform to real world CP-derived SQLite
#16
gwaybio
opened
1 year ago
5
Adding single cell CellProfiler morphology feature pipeline
#15
gwaybio
closed
2 years ago
1
Completing conda environments and adding to gitignore
#14
gwaybio
closed
2 years ago
1
adding/fixing documentation and figures
#13
jenna-tomkinson
closed
2 years ago
3
fixed README
#12
jenna-tomkinson
closed
2 years ago
0
add README documentation
#11
jenna-tomkinson
closed
2 years ago
1
Add cp module
#10
jenna-tomkinson
closed
2 years ago
2
Add pipelines and documentation for extracting features
#9
jenna-tomkinson
closed
2 years ago
2
SQLite File Creation Issue
#8
jenna-tomkinson
closed
1 year ago
1
adding code and README
#7
jenna-tomkinson
closed
2 years ago
2
update IC pipeline and add corrected images
#6
jenna-tomkinson
closed
2 years ago
0
Add images to 0_download_data
#5
jenna-tomkinson
closed
2 years ago
3
Open data access
#4
gwaybio
closed
2 years ago
7
Add illumination correction pipeline
#3
jenna-tomkinson
closed
2 years ago
7
1 preprocessing data
#2
jenna-tomkinson
closed
2 years ago
2
add .gitignore
#1
jenna-tomkinson
closed
2 years ago
1