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WayScience / pyroptosis_signature_data_analysis

Analysis repository for the pyroptosis morphology map
BSD 3-Clause "New" or "Revised" License
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Jupytext vs nbconvert #59

Open MikeLippincott opened 1 year ago

MikeLippincott commented 1 year ago 
          It looked like some files were treated with jupytext and others weren't. Consider keeping consistent in one method to convert notebook files to python modules. One way to do this may be to use a [`pyproject.toml` config for Jupytext](https://jupytext.readthedocs.io/en/latest/config.html#global-pairing).

_Originally posted by @d33bs in https://github.com/WayScience/pyroptosis_signature_data_analysis/pull/56#discussion_r1319127215_

MikeLippincott commented 1 year ago

jupytext converts .ipynb with R kernel into .py files which is an issue. I haven't found nbconvert to be compatible with precommit. Will have to pick one over the other...