Welcome to Awesome Mamba Resources! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba. Whether you're a beginner or an experienced user, this collection aims to provide a comprehensive reference for all things Mamba. Explore the latest research papers, dive into helpful tutorials, and discover insightful videos to enhance your understanding and proficiency in Mamba. Join us in this open collaboration to foster knowledge sharing and empower the Mamba community. Let's embark on an exciting journey with Mamba!
Feel free to modify and customize this introduction according to your preferences. Good luck with your repository! If you have any other questions, feel free to ask. -by ChatGPT
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Enjoy it below!
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation [paper] [code] [dataset] [homepage] (2024.01.09)
SegMamba: Long-range Sequential Modeling Mamba For 3D Medical Image Segmentation [paper] [code] (2024.01.24)
MambaMorph: a Mamba-based Backbone with Contrastive Feature Learning for Deformable MR-CT Registration [paper] [code] (2024.01.24)
Vivim: a Video Vision Mamba for Medical Video Object Segmentation [paper] [code] (2024.01.25)
VM-UNet: Vision Mamba UNet for Medical Image Segmentation [paper] [code] (2024.02.04)
Swin-UMamba: Mamba-based UNet with ImageNet-based pretraining [paper] [code] (2024.02.05)
nnMamba: 3D Biomedical Image Segmentation, Classification and Landmark Detection with State Space Model [paper] [code] (2024.02.05)
Mamba-UNet: UNet-Like Pure Visual Mamba for Medical Image Segmentation [paper] [code] (2024.02.07)
FD-Vision Mamba for Endoscopic Exposure Correction [paper] (2024.02.09)
Semi-Mamba-UNet: Pixel-Level Contrastive Cross-Supervised Visual Mamba-based UNet for Semi-Supervised Medical Image Segmentation [paper] [code] (2024.02.11)
P-Mamba: Marrying Perona Malik Diffusion with Mamba for Efficient Pediatric Echocardiographic Left Ventricular Segmentation [paper] (2024.02.13)
Weak-Mamba-UNet: Visual Mamba Makes CNN and ViT Work Better for Scribble-based Medical Image Segmentation [paper] [code] (2024.02.16)
MambaMIR: An Arbitrary-Masked Mamba for Joint Medical Image Reconstruction and Uncertainty Estimation [paper] (2024.02.28)
A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks
[Paper] [Huggingface] [code] (2024.02.28)
MedMamba: Vision Mamba for Medical Image Classification [paper] [code] (2024.03.06)
Motion-Guided Dual-Camera Tracker for Low-Cost Skill Evaluation of Gastric Endoscopy [paper] (2024.03.08)
MamMIL: Multiple Instance Learning for Whole Slide Images with State Space Models [paper] (2024.03.08)
LightM-UNet: Mamba Assists in Lightweight UNet for Medical Image Segmentation [paper] [code] (2024.03.08)
ClinicalMamba: A Generative Clinical Language Model on Longitudinal Clinical Notes [paper] (2024.03.09)
Large Window-based Mamba UNet for Medical Image Segmentation: Beyond Convolution and Self-attention [paper] [code] (2024.03.12)
MD-Dose: A Diffusion Model based on the Mamba for Radiotherapy Dose Prediction [paper] [code] (2024.03.13)
VM-UNET-V2 Rethinking Vision Mamba UNet for Medical Image Segmentation [paper] [code] (2024.03.14)
H-vmunet: High-order Vision Mamba UNet for Medical Image Segmentation [paper] [code] (2024.03.20)
ProMamba: Prompt-Mamba for polyp segmentation [paper] (2024.03.20)
UltraLight VM-UNet: Parallel Vision Mamba Significantly Reduces Parameters for Skin Lesion Segmentation [paper] [code] (2024.03.29)
VMambaMorph: a Visual Mamba-based Framework with Cross-Scan Module for Deformable 3D Image Registration [paper] (2024.04.07)
Vim4Path: Self-Supervised Vision Mamba for Histopathology Images [paper] [code] (2024.04.20)
Sparse Reconstruction of Optical Doppler Tomography Based on State Space Model [paper] (2024.04.26)
AC-MAMBASEG: An adaptive convolution and Mamba-based architecture for enhanced skin lesion segmentation [paper] [code] (2024.05.05)
HC-Mamba: Vision MAMBA with Hybrid Convolutional Techniques for Medical Image Segmentation [paper] (2024.05.08)
VM-DDPM: Vision Mamba Diffusion for Medical Image Synthesis [paper] (2024.05.09)
I2I-Mamba: Multi-modal medical image synthesis via selective state space modeling [paper] [code] (2024.05.22)
EHRMamba: Towards Generalizable and Scalable Foundation Models for Electronic Health Records [paper] (2024.05.23)
MUCM-Net: A Mamba Powered UCM-Net for Skin Lesion Segmentation [paper] [code] (2024.05.24)
UU-Mamba: Uncertainty-aware U-Mamba for Cardiac Image Segmentation [paper] (2024.05.25)
Enhancing Global Sensitivity and Uncertainty Quantification in Medical Image Reconstruction with Monte Carlo Arbitrary-Masked Mamba [paper] (2024.05.27)
Cardiovascular Disease Detection from Multi-View Chest X-rays with BI-Mamba [paper] (2024.05.28)
fMRI predictors based on language models of increasing complexity recover brain left lateralization [paper] [code] (2024.05.28)
SAM-VMNet: Deep Neural Networks For Coronary Angiography Vessel Segmentation [paper] (2024.06.01)
Combining Graph Neural Network and Mamba to Capture Local and Global Tissue Spatial Relationships in Whole Slide Images [paper] [code] (2024.06.05)
Convolution and Attention-Free Mamba-based Cardiac Image Segmentation [paper] (2024.06.09)
MMR-Mamba: Multi-Contrast MRI Reconstruction with Mamba and Spatial-Frequency Information Fusion [paper] (2024.06.27)
Vision Mamba for Classification of Breast Ultrasound Images [paper] (2024.07.04)
Fine-grained Context and Multi-modal Alignment for Freehand 3D Ultrasound Reconstruction [paper] (2024.07.05)
LGRNet: Local-Global Reciprocal Network for Uterine Fibroid Segmentation in Ultrasound Videos [paper] [code] (2024.07.08)
SliceMamba for Medical Image Segmentation [paper] (2024.07.11)
BioMamba: A Pre-trained Biomedical Language Representation Model Leveraging Mamba [paper] (2024.08.05)
SMILES-Mamba: Chemical Mamba Foundation Models for Drug ADMET Prediction [paper] (2024.08.11)
HMT-UNet: A hybird Mamba-Transformer Vision UNet for Medical Image Segmentation [paper] [code] (2024.08.21)
Hierarchical Spatio-Temporal State-Space Modeling for fMRI Analysis [paper] (2024.08.23)
MSVM-UNet: Multi-Scale Vision Mamba UNet for Medical Image Segmentation [paper] [code] (2024.08.25)
LoG-VMamba: Local-Global Vision Mamba for Medical Image Segmentation [paper] [code] (2024.08.26)
Mamba2MIL: State Space Duality Based Multiple Instance Learning for Computational Pathology [paper] [code] (2024.08.27)
MpoxMamba: A Grouped Mamba-based Lightweight Hybrid Network for Mpox Detection [paper] [code] (2024.09.06)
OCTAMamba: A State-Space Model Approach for Precision OCTA Vasculature Segmentation [paper] [code] (2024.09.12)
Microscopic-Mamba: Revealing the Secrets of Microscopic Images with Just 4M Parameters [paper] [code] (2024.09.12)
Learning Brain Tumor Representation in 3D High-Resolution MR Images via Interpretable State Space Models [paper] (2024.09.12)
Tri-Plane Mamba: Efficiently Adapting Segment Anything Model for 3D Medical Images [paper] (2024.09.13)
SPRMamba: Surgical Phase Recognition for Endoscopic Submucosal Dissection with Mamba [paper] (2024.09.18)
MambaRecon: MRI Reconstruction with Structured State Space Models [paper] (2024.09.19)
UU-Mamba: Uncertainty-aware U-Mamba for Cardiovascular Segmentation [paper] (2024.09.22)
Protein-Mamba: Biological Mamba Models for Protein Function Prediction [paper] (2024.09.22)
Multi-resolution visual Mamba with multi-directional selective mechanism for retinal disease detection [paper] (2024.10.11)
UMambaAdj: Advancing GTV Segmentation for Head and Neck Cancer in MRI-Guided RT with UMamba and nnU-Net ResEnc Planner [paper] (2024.10.16)
Taming Mambas for Voxel Level 3D Medical Image Segmentation [paper] (2024.10.20)
R2Gen-Mamba: A Selective State Space Model for Radiology Report Generation [paper] [code] (2024.10.21)
Bio2Token: All-atom tokenization of any biomolecular structure with Mamba [paper] (2024.10.24)
SC-MAMBA2: Leveraging State-Space Models for Efficient Single-Cell Ultra-Long Transcriptome Modeling [paper] (2024.10.26)
🎉 Thank you for considering contributing to our Awesome Mamba Collection repository! 🚀
README.md
file.
If you find this repository useful, please consider citing our paper:
@article{cai2024mambats,
title={MambaTS: Improved Selective State Space Models for Long-term Time Series Forecasting},
author={Cai, Xiuding and Zhu, Yaoyao and Wang, Xueyao and Yao, Yu},
journal={arXiv preprint arXiv:2405.16440},
year={2024}
}
Thanks the template from Awesome-Visual-Transformer and Awesome State-Space Resources for ML