YeoLab flotilla issues - Githubissues

YeoLab / flotilla

Reproducible machine learning analysis of gene expression and alternative splicing data

http://yeolab.github.io/flotilla/docs

BSD 3-Clause "New" or "Revised" License

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issues

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Bump rack-protection from 1.5.1 to 1.5.5 in /doc/.deploy_heroku

#352 dependabot[bot] opened 1 year ago
0
Bump rack from 1.5.2 to 1.6.13 in /doc/.deploy_heroku

#351 dependabot[bot] opened 2 years ago
0
Bump rack from 1.5.2 to 1.6.12 in /doc/.deploy_heroku

#350 dependabot[bot] closed 2 years ago
1
Bump rack from 1.5.2 to 1.6.11 in /doc/.deploy_heroku

#349 dependabot[bot] closed 4 years ago
1
install of flotilla in window anaconda

#348 rajitnair opened 6 years ago
0
Bug when installing flotilla

#347 htnani opened 6 years ago
0
Widgets not working

#346 fontclos opened 7 years ago
1
Problems with combat

#345 olgabot opened 7 years ago
0
Integrate with 10x genomics output

#344 olgabot opened 7 years ago
0
Flexible plot feature

#343 olgabot closed 7 years ago
0
add fault-tolerant differential expression test

#342 olgabot closed 7 years ago
0
use Holovies for creating panels of interactive figures

#341 olgabot opened 7 years ago
0
Number of mapped reads gets modified upon study creation?

#340 olgabot opened 7 years ago
0
Make `plot_feature` more flexible

#339 olgabot opened 7 years ago
0
Get rid of `expression_thresh`

#338 olgabot opened 7 years ago
0
Get rid of `.data_original`

#337 olgabot opened 7 years ago
0
Yet another Python3 bug

#336 olgabot opened 7 years ago
1
Update README.md

#335 BioGeek opened 7 years ago
1
Yet another matrix data format

#334 olgabot opened 8 years ago
0
Wishbone single celll project

#333 olgabot opened 8 years ago
0
`plot_gene` to support arbitrary ordering (like psueodotime)

#332 olgabot opened 8 years ago
0
Python2andpython3

#331 alaindomissy closed 8 years ago
2
To do list

#330 alaindomissy opened 8 years ago
0
use % formatter

#329 EdwardBetts closed 8 years ago
2
Flotilla errors with study.plot_graph()

#328 LeenMachine closed 8 years ago
1
Flotilla fails with ValueError while executing "plot_pca" command

#327 shassathe closed 8 years ago
8
Replace `Study` objects with `xray` datasets

#326 olgabot opened 8 years ago
0
Simplify code

#325 olgabot opened 8 years ago
0
Reinstalled flotilla and get "load_hdf" import error

#324 shassathe closed 8 years ago
2
Threshold of expression data uses unlogged threshold

#323 olgabot opened 8 years ago
0
Fix clustermap thresh

#322 olgabot closed 8 years ago
0
Error Importing Flotilla

#321 shassathe closed 8 years ago
2
Correct sandbox call: conda create --name flotilla_env

#320 DrMZZ closed 8 years ago
1
Allow for any number of expression or splicing datasets on a study

#319 olgabot opened 8 years ago
0
Cannot setup flotilla on Windows?

#318 CinchBlue opened 8 years ago
1
Update violinplots to work with seaborn 0.6

#317 olgabot opened 8 years ago
0
Fix failing splicing compute tests and get rid of various code smells

#316 olgabot opened 8 years ago
0
abstract out machine learning visualization, metadata-based subsetting, and splicing compute

#315 olgabot opened 8 years ago
0
make `plot_feature` able to take multiple ids and spit out a panel of gene expression/splicing violinplots

#314 olgabot opened 8 years ago
0
Unable to download hg19 annotations

#313 hjeanc opened 8 years ago
3
change example for how to run coverage testing on a single file

#312 olgabot closed 9 years ago
0
Use at least 20 samples for all splicing calculations

#311 olgabot closed 9 years ago
1
Stepwise modalities

#310 olgabot closed 9 years ago
0
Fix tidy_splicing_with_expression to deal with when splicing events m…

#309 olgabot closed 9 years ago
1
By default, rasterize the lavalamp plot

#308 olgabot closed 9 years ago
1
Can't embark on study name only

#307 olgabot opened 9 years ago
0
Update combat code to work with multiple covariates in the batches

#306 olgabot closed 9 years ago
1
Add auto-deployment to PyPI on tagged branches

#305 olgabot closed 9 years ago
0
tidy_splicing_with_expression should deal with splicing events mapping to multiple gene ids

#304 olgabot opened 9 years ago
0
Py3k test fixes

#303 olgabot closed 9 years ago
0