hs.plot_local_correlations() shows nothing

YosefLab / Hotspot

https://hotspot.readthedocs.io/en/latest/

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hs.plot_local_correlations() shows nothing #23

Closed Polligator closed 2 years ago

Polligator commented 2 years ago

I tried hotspot demo: Transcriptional Patterns in CD4 T Cells, but the hs.plot_local_correlations() function pops no plot, did not see any error messages, could you please let me know what are the possible reasons and resolutions for this? I'm currently running ubuntu 22.04, analysis was done with python 3.10. Thanks.

adamgayoso commented 2 years ago

I just double checked and it works for me in google colab. I would imagine this is a matplotlib issue. The code also hasn't been tested on python 3.10.

Polligator commented 2 years ago

closing this issue for now, plt.show() will resolve the problem