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YuLab-SMU
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ggmsa
:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
http://yulab-smu.top/ggmsa
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Adding amino acid annotations
#70
TKMarkCheng
opened
2 months ago
0
Disagreement, Custom Colors, DNA
#69
Elliott77
opened
3 months ago
0
Legend is not showing with show.legend = T
#68
davidkim8
opened
5 months ago
0
Add overlay for Domains and other annotations
#67
docmanny
opened
5 months ago
0
ggmsa函数可能需要一个选择比对序列类型的参数
#66
CGsTree
opened
6 months ago
0
CRAN
#65
KlausVigo
closed
7 months ago
1
ggmsa rlang error
#64
alslonik
opened
7 months ago
0
Consensus Sequence Threshold?
#63
ruirachao
opened
11 months ago
0
Basic question: how to upload MSA into R to use with ggmsa
#62
Franz4272
closed
1 year ago
1
Support alignments from `msa` package
#61
mschubert
opened
1 year ago
0
How to shift to display the conservative region, and separates the mismatched regions？
#60
shitiezhu
opened
1 year ago
0
Seq names are not shown
#59
Dobrokhotov1989
opened
1 year ago
0
Re-list ggmsa on CRAN
#58
ababaian
closed
1 year ago
3
adjusting geom_msabar()
#57
omarkr8
opened
1 year ago
0
Plotting alignment in wide format
#56
vhfsantos
opened
1 year ago
1
boxshade color
#55
groponp
opened
1 year ago
0
custom color with consensus_views
#54
csgenomics-admin
opened
1 year ago
0
Error in parse(text = elt) : <text>:1:7: unexpected symbol
#53
mmotoc
opened
1 year ago
2
ggmsa is very slow cause of a very big pdf?
#52
trilisser
opened
2 years ago
0
Stop codon
#51
Close-your-eyes
closed
1 year ago
1
Synchronized links in section Learn More
#50
CaoTianze
closed
2 years ago
0
non-numeric argument to binary operator
#49
xuzhougeng
opened
2 years ago
1
Text overlapping.
#48
art-egorov
opened
2 years ago
2
Protein secondary structure & domain annotation
#47
gezmi
opened
2 years ago
6
question about save to image
#46
orangeSi
closed
2 years ago
4
cannot read fasta alignment file
#45
wowfee
closed
2 years ago
1
The ggmsa::ggSeqBundle() of arg:line_widch should be line_width?
#44
zhipengliux
opened
2 years ago
0
Creat FASTA files from APE files
#43
chrismahony
opened
2 years ago
1
Is there a way to only highlight/colour unconserved regions?
#42
cms72
opened
2 years ago
2
how to add a group of point in to ggmsa
#41
loverlyday
opened
2 years ago
1
new problem in the GGMsa
#40
fishboyID
closed
2 years ago
3
Commented out examples in documentation of `ggmsa()`?
#39
ramiromagno
closed
2 years ago
6
Can't use `ggplot2::coord_flip()` with ggmsa plots?
#38
ramiromagno
closed
2 years ago
2
Font in alignments is pixelated
#37
ramiromagno
opened
2 years ago
3
Error in if (freq1 > 0.9 && freq2 > 0) {: missing value where TRUE/FALSE needed
#36
ramiromagno
opened
2 years ago
1
Note: wrong number of arguments to 'seq_len'
#35
ramiromagno
opened
2 years ago
2
geom_msaBar conservation layer incorrectly aligned
#34
tgstoecker
closed
2 years ago
2
How to install ggmsa under R 3.6
#33
binlu1981
opened
2 years ago
3
Add a 'None' option for color
#32
cmatKhan
opened
2 years ago
3
Required R version too new
#31
iferres
closed
2 years ago
1
update test
#30
xiangpin
closed
2 years ago
0
Spelling of the ggmsa argument "posHighligthed"
#29
takosa
closed
2 years ago
1
Geom_Logo masks the first line of sequence alignment
#28
nunder
opened
2 years ago
5
Problems with tree, MSA and logo
#27
nunder
opened
2 years ago
2
Adjusting x axis of facet_msa?
#26
bickibird
opened
2 years ago
3
ggmsa plot error due to unique names
#25
akjrobijns
opened
2 years ago
4
I can't find Cripavirus.fasta
#24
aimer-entropy
opened
2 years ago
2
Combine ggmsa plot and ggtree?
#23
Ekie22
opened
2 years ago
2
fix variable names error in color_scheme
#22
atm44
closed
3 years ago
0
Error with custom color
#21
atm44
opened
3 years ago
1
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