示例数据运行错误

[zrr97]

张老师好，我安装软件的时候没有提示报错，用conda安装依赖环境的时候也没有提示报错。 git clone https://github.com/YuboZhangPKU/ERICA.git cd ERICA conda create --name ERICA python=3.6 tensorflow=2.1.0 plotnine=0.6.0

但是运行示例数据的时候，有报错。以下是运行命令是报错情况。

(ERICA) (ERICA)[zhurr@shilab ERICA]$ ./test.sh -bash: ./test.sh: Permission denied (ERICA) (ERICA)[zhurr@shilab ERICA]$ sh ./test.sh Four populations will be analysed. pop1 H_m_aglaope_1 pop1 H_m_aglaope_2 pop1 H_m_aglaope_3 pop1 H_m_aglaope_4 pop2 H_m_amaryllis_1 pop2 H_m_amaryllis_2 pop2 H_m_amaryllis_3 pop2 H_m_amaryllis_4 pop3 H_t_thelxinoe_1 pop3 H_t_thelxinoe_2 pop3 H_t_thelxinoe_3 pop3 H_t_thelxinoe_4 pop4 H_ethilla_1 pop4 H_ethilla_2 pop4 H_ethilla_3 pop4 H_ethilla_4 Tue May 21 14:27:20 2024 Chromosome Hmel218003o will be analysed. Tue May 21 14:27:23 2024 Chromosome Hmel218003o done. Traceback (most recent call last): File "ERICAPrediction.py", line 22, in import tensorflow as tf File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 101, in from tensorflow_core import File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/init.py", line 40, in from tensorflow.python.tools import module_util as _module_util File "", line 971, in _find_and_load File "", line 947, in _find_and_load_unlocked File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 50, in getattr module = self._load() File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 44, in _load module = _importlib.import_module(self.name) File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/init.py", line 75, in from tensorflow.python.framework.framework_lib import # pylint: disable=redefined-builtin File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/framework/framework_lib.py", line 25, in from tensorflow.python.framework.ops import Graph File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/framework/ops.py", line 41, in from tensorflow.python.eager import context File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/eager/context.py", line 25, in from absl import logging File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/logging/init.py", line 97, in from absl import flags File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/flags/init.py", line 35, in from absl.flags import _argument_parser File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/flags/_argument_parser.py", line 82, in class ArgumentParser(Generic[_T], metaclass=_ArgumentParserCache): TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases Traceback (most recent call last): File "ERICAVisualization.py", line 60, in with open (ARGS.InputFile,'r') as filein: FileNotFoundError: [Errno 2] No such file or directory: 'test/pop_test_Hmel218003o_res.txt' Five populations will be analysed. pop1 GP39 pop1 GP77 pop1 GP536 pop1 GP640 pop1 GP761-1 pop1 GP536 pop1 GP536 pop1 GP536 pop2 Nipponbare pop2 HP14 pop2 HP44 pop2 HP48 pop2 HP314 pop2 HP103 pop2 HP45 pop2 UR28 pop3 W1943 pop3 W3095-2 pop3 Orufi pop3 W3078-2 pop3 W1943 pop3 W3095-2 pop3 Orufi pop3 W3078-2 pop4 W0170 pop4 W1698 pop4 W1754 pop4 W0123-1 pop4 Oniva pop4 Oniva pop4 Oniva pop4 Oniva pop5 Obart pop5 Obart pop5 Obart pop5 Obart pop5 Obart pop5 Obart pop5 Obart pop5 Obart Tue May 21 14:27:25 2024 Chromosome 10 will be analysed. Tue May 21 14:27:29 2024 Chromosome 10 done. Traceback (most recent call last): File "ERICAPrediction.py", line 22, in import tensorflow as tf File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 101, in from tensorflow_core import File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/init.py", line 40, in from tensorflow.python.tools import module_util as _module_util File "", line 971, in _find_and_load File "", line 947, in _find_and_load_unlocked File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 50, in getattr module = self._load() File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow/init.py", line 44, in _load module = _importlib.import_module(self.name) File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/init.py", line 75, in from tensorflow.python.framework.framework_lib import # pylint: disable=redefined-builtin File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/framework/framework_lib.py", line 25, in from tensorflow.python.framework.ops import Graph File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/framework/ops.py", line 41, in from tensorflow.python.eager import context File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/tensorflow_core/python/eager/context.py", line 25, in from absl import logging File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/logging/init.py", line 97, in from absl import flags File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/flags/init.py", line 35, in from absl.flags import _argument_parser File "/public1/user/zhurr/miniconda3/envs/ERICA/lib/python3.6/site-packages/absl/flags/_argument_parser.py", line 82, in class ArgumentParser(Generic[_T], metaclass=_ArgumentParserCache): TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases Traceback (most recent call last): File "ERICAVisualization.py", line 60, in with open (ARGS.InputFile,'r') as filein: FileNotFoundError: [Errno 2] No such file or directory: 'test/five_pop_test_10_res.txt'

[YuboZhangPKU]

您好，感谢您使用我们的软件。报错信息反映了tensorflow安装过程存在错误，可能与软件版本不兼容有关，可以考虑更改absl版本。类似的报错信息供参考。https://github.com/abseil/abseil-py/issues/277

[zrr97]

好的，我试一下，感谢！